Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2811 and Rru_A2812 overlap by 17 nucleotides Rru_A2812 and Rru_A2813 are separated by 44 nucleotides Rru_A2813 and Rru_A2814 are separated by 108 nucleotides Rru_A2814 and Rru_A2815 are separated by 4 nucleotides Rru_A2815 and Rru_A2816 are separated by 136 nucleotides
Rru_A2811: Rru_A2811 - hypothetical protein (NCBI), at 3,244,402 to 3,245,727
_A2811
Rru_A2812: Rru_A2812 - molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI), at 3,245,711 to 3,246,382
_A2812
Rru_A2813: Rru_A2813 - Molybdopterin cofactor biosynthesis MoaC region (NCBI), at 3,246,427 to 3,246,927
_A2813
Rru_A2814: Rru_A2814 - Molybdopterin converting factor, subunit 1 (NCBI), at 3,247,036 to 3,247,287
_A2814
Rru_A2815: Rru_A2815 - Molybdopterin biosynthesis MoaE (NCBI), at 3,247,292 to 3,247,780
_A2815
Rru_A2816: Rru_A2816 - Transcriptional Regulator, TetR family (NCBI), at 3,247,917 to 3,248,495
_A2816
Position (kb) 3246
3247 Strain fitness (log2 ratio) -1
0
1
2
3 at 3245.692 kb on + strand at 3245.692 kb on + strand at 3245.692 kb on + strand at 3245.693 kb on - strand at 3245.693 kb on - strand at 3245.693 kb on - strand at 3246.304 kb on + strand, within Rru_A2812 at 3246.304 kb on + strand, within Rru_A2812 at 3246.305 kb on - strand, within Rru_A2812 at 3246.829 kb on + strand, within Rru_A2813 at 3246.829 kb on + strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.852 kb on + strand, within Rru_A2813 at 3247.048 kb on + strand at 3247.048 kb on + strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.094 kb on + strand, within Rru_A2814 at 3247.094 kb on + strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.460 kb on + strand, within Rru_A2815
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,245,692 + +1.1 3,245,692 + +0.9 3,245,692 + -0.0 3,245,693 - +1.2 3,245,693 - +0.8 3,245,693 - +0.0 3,246,304 + Rru_A2812 0.88 +1.0 3,246,304 + Rru_A2812 0.88 +2.0 3,246,305 - Rru_A2812 0.88 -1.0 3,246,829 + Rru_A2813 0.80 -0.0 3,246,829 + Rru_A2813 0.80 +3.3 3,246,830 - Rru_A2813 0.80 -0.0 3,246,830 - Rru_A2813 0.80 -0.0 3,246,830 - Rru_A2813 0.80 -0.0 3,246,830 - Rru_A2813 0.80 +1.6 3,246,830 - Rru_A2813 0.80 +0.8 3,246,852 + Rru_A2813 0.85 +2.4 3,247,048 + +0.8 3,247,048 + -0.0 3,247,049 - -0.1 3,247,049 - +2.1 3,247,049 - -0.0 3,247,094 + Rru_A2814 0.23 +1.2 3,247,094 + Rru_A2814 0.23 +1.7 3,247,095 - Rru_A2814 0.23 +1.1 3,247,095 - Rru_A2814 0.23 -0.0 3,247,460 + Rru_A2815 0.34 -0.0
Or see this region's nucleotide sequence