Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2710 and Rru_A2711 are separated by 19 nucleotides Rru_A2711 and Rru_A2712 overlap by 16 nucleotides Rru_A2712 and Rru_A2713 are separated by 17 nucleotides Rru_A2713 and Rru_A2714 are separated by 654 nucleotides
Rru_A2710: Rru_A2710 - Gram negative topoisomerase IV, subunit B (NCBI), at 3,131,976 to 3,133,973
_A2710
Rru_A2711: Rru_A2711 - GCN5-related N-acetyltransferase (NCBI), at 3,133,993 to 3,134,505
_A2711
Rru_A2712: Rru_A2712 - Transcriptional Regulator, TetR family (NCBI), at 3,134,490 to 3,135,110
_A2712
Rru_A2713: Rru_A2713 - hypothetical protein (NCBI), at 3,135,128 to 3,135,394
_A2713
Rru_A2714: Rru_A2714 - hypothetical protein (NCBI), at 3,136,049 to 3,137,098
_A2714
Position (kb)
3134
3135
3136 Strain fitness (log2 ratio)
-1
0
1
2 at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3134.081 kb on + strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.360 kb on + strand, within Rru_A2711 at 3134.361 kb on - strand, within Rru_A2711 at 3134.372 kb on + strand, within Rru_A2711 at 3134.373 kb on - strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.984 kb on - strand, within Rru_A2712 at 3134.984 kb on - strand, within Rru_A2712 at 3135.124 kb on - strand at 3135.124 kb on - strand at 3135.124 kb on - strand at 3135.193 kb on - strand, within Rru_A2713 at 3135.352 kb on + strand, within Rru_A2713 at 3135.585 kb on + strand at 3135.585 kb on + strand at 3135.585 kb on + strand at 3135.586 kb on - strand at 3135.644 kb on + strand at 3135.645 kb on - strand at 3135.645 kb on - strand at 3135.897 kb on - strand at 3135.974 kb on + strand at 3135.975 kb on - strand at 3136.025 kb on - strand at 3136.065 kb on + strand at 3136.065 kb on + strand at 3136.065 kb on + strand at 3136.065 kb on + strand at 3136.066 kb on - strand at 3136.066 kb on - strand at 3136.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,133,994 + -0.0 3,133,994 + -1.6 3,133,994 + +2.3 3,133,994 + +0.9 3,133,995 - -0.0 3,133,995 - +1.1 3,133,995 - +1.0 3,133,995 - -0.0 3,134,081 + Rru_A2711 0.17 +0.5 3,134,082 - Rru_A2711 0.17 -0.0 3,134,082 - Rru_A2711 0.17 +1.5 3,134,082 - Rru_A2711 0.17 +0.4 3,134,128 + Rru_A2711 0.26 -1.6 3,134,128 + Rru_A2711 0.26 -0.0 3,134,129 - Rru_A2711 0.27 -0.0 3,134,129 - Rru_A2711 0.27 +1.1 3,134,360 + Rru_A2711 0.72 +0.5 3,134,361 - Rru_A2711 0.72 +1.0 3,134,372 + Rru_A2711 0.74 -0.0 3,134,373 - Rru_A2711 0.74 +1.0 3,134,375 + Rru_A2711 0.74 -0.0 3,134,375 + Rru_A2711 0.74 +0.0 3,134,375 + Rru_A2711 0.74 +0.5 3,134,375 + Rru_A2711 0.74 +0.4 3,134,376 - Rru_A2711 0.75 +1.5 3,134,376 - Rru_A2711 0.75 +0.6 3,134,376 - Rru_A2711 0.75 +1.1 3,134,376 - Rru_A2711 0.75 -0.0 3,134,984 - Rru_A2712 0.80 -0.0 3,134,984 - Rru_A2712 0.80 -0.0 3,135,124 - +0.8 3,135,124 - -1.0 3,135,124 - +2.5 3,135,193 - Rru_A2713 0.24 -0.0 3,135,352 + Rru_A2713 0.84 +1.2 3,135,585 + +1.4 3,135,585 + +0.4 3,135,585 + +0.8 3,135,586 - -0.0 3,135,644 + +1.1 3,135,645 - +1.0 3,135,645 - +0.7 3,135,897 - -0.6 3,135,974 + -0.0 3,135,975 - -0.1 3,136,025 - +1.0 3,136,065 + +0.6 3,136,065 + +0.5 3,136,065 + +2.3 3,136,065 + +0.4 3,136,066 - +0.5 3,136,066 - +1.7 3,136,066 - -0.0
Or see this region's nucleotide sequence