Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2591 and Rru_A2592 are separated by 251 nucleotides Rru_A2592 and Rru_A2593 overlap by 25 nucleotides
Rru_A2591: Rru_A2591 - hypothetical protein (NCBI), at 3,011,509 to 3,012,225
_A2591
Rru_A2592: Rru_A2592 - hypothetical protein (NCBI), at 3,012,477 to 3,013,172
_A2592
Rru_A2593: Rru_A2593 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 3,013,148 to 3,014,857
_A2593
Position (kb)
3012
3013
3014 Strain fitness (log2 ratio)
-1
0
1
2 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.733 kb on + strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.734 kb on - strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.810 kb on + strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.811 kb on - strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.972 kb on + strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591 at 3011.973 kb on - strand, within Rru_A2591 at 3013.066 kb on + strand, within Rru_A2592 at 3013.066 kb on + strand, within Rru_A2592 at 3013.067 kb on - strand, within Rru_A2592 at 3013.067 kb on - strand, within Rru_A2592 at 3013.212 kb on + strand at 3013.212 kb on + strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.213 kb on - strand at 3013.247 kb on - strand at 3013.247 kb on - strand at 3013.575 kb on + strand, within Rru_A2593 at 3013.701 kb on + strand, within Rru_A2593 at 3013.701 kb on + strand, within Rru_A2593 at 3013.702 kb on - strand, within Rru_A2593 at 3013.971 kb on + strand, within Rru_A2593 at 3014.163 kb on - strand, within Rru_A2593 at 3014.169 kb on - strand, within Rru_A2593
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,011,733 + Rru_A2591 0.31 +0.1 3,011,733 + Rru_A2591 0.31 +1.1 3,011,733 + Rru_A2591 0.31 +1.0 3,011,733 + Rru_A2591 0.31 +0.3 3,011,734 - Rru_A2591 0.31 +0.8 3,011,734 - Rru_A2591 0.31 -0.1 3,011,810 + Rru_A2591 0.42 +0.8 3,011,810 + Rru_A2591 0.42 +0.5 3,011,810 + Rru_A2591 0.42 +2.5 3,011,811 - Rru_A2591 0.42 -0.0 3,011,811 - Rru_A2591 0.42 +1.0 3,011,811 - Rru_A2591 0.42 -0.0 3,011,811 - Rru_A2591 0.42 -0.0 3,011,811 - Rru_A2591 0.42 +1.2 3,011,811 - Rru_A2591 0.42 +2.0 3,011,811 - Rru_A2591 0.42 -0.0 3,011,811 - Rru_A2591 0.42 +1.0 3,011,972 + Rru_A2591 0.65 +1.3 3,011,972 + Rru_A2591 0.65 -0.0 3,011,973 - Rru_A2591 0.65 +0.8 3,011,973 - Rru_A2591 0.65 -0.0 3,013,066 + Rru_A2592 0.85 -0.0 3,013,066 + Rru_A2592 0.85 +1.7 3,013,067 - Rru_A2592 0.85 +0.8 3,013,067 - Rru_A2592 0.85 +1.2 3,013,212 + +0.7 3,013,212 + -0.0 3,013,213 - -0.0 3,013,213 - -0.0 3,013,213 - +2.1 3,013,213 - +0.6 3,013,213 - -0.0 3,013,213 - +0.9 3,013,247 - -0.0 3,013,247 - +0.4 3,013,575 + Rru_A2593 0.25 +2.1 3,013,701 + Rru_A2593 0.32 -0.0 3,013,701 + Rru_A2593 0.32 -0.0 3,013,702 - Rru_A2593 0.32 -1.4 3,013,971 + Rru_A2593 0.48 +1.4 3,014,163 - Rru_A2593 0.59 +1.5 3,014,169 - Rru_A2593 0.60 +2.1
Or see this region's nucleotide sequence