Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2587 and Rru_A2588 are separated by 42 nucleotides Rru_A2588 and Rru_A2589 are separated by 34 nucleotides
Rru_A2587: Rru_A2587 - hypothetical protein (NCBI), at 3,006,990 to 3,008,003
_A2587
Rru_A2588: Rru_A2588 - hypothetical protein (NCBI), at 3,008,046 to 3,008,549
_A2588
Rru_A2589: Rru_A2589 - hypothetical protein (NCBI), at 3,008,584 to 3,009,942
_A2589
Position (kb)
3008
3009 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3007.151 kb on + strand, within Rru_A2587 at 3007.234 kb on + strand, within Rru_A2587 at 3007.234 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.261 kb on + strand, within Rru_A2587 at 3007.262 kb on - strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.268 kb on + strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.269 kb on - strand, within Rru_A2587 at 3007.270 kb on + strand, within Rru_A2587 at 3007.270 kb on + strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.271 kb on - strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.336 kb on + strand, within Rru_A2587 at 3007.337 kb on - strand, within Rru_A2587 at 3007.562 kb on + strand, within Rru_A2587 at 3007.946 kb on - strand at 3007.946 kb on - strand at 3007.946 kb on - strand at 3008.657 kb on + strand at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.014 kb on + strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.015 kb on - strand, within Rru_A2589 at 3009.017 kb on + strand, within Rru_A2589 at 3009.018 kb on - strand, within Rru_A2589 at 3009.494 kb on + strand, within Rru_A2589
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 3,007,151 + Rru_A2587 0.16 -0.4 3,007,234 + Rru_A2587 0.24 +2.9 3,007,234 + Rru_A2587 0.24 +2.3 3,007,261 + Rru_A2587 0.27 +1.1 3,007,261 + Rru_A2587 0.27 +0.8 3,007,261 + Rru_A2587 0.27 +1.9 3,007,261 + Rru_A2587 0.27 +1.0 3,007,262 - Rru_A2587 0.27 +1.0 3,007,268 + Rru_A2587 0.27 -1.0 3,007,268 + Rru_A2587 0.27 -1.0 3,007,268 + Rru_A2587 0.27 +1.3 3,007,268 + Rru_A2587 0.27 +1.2 3,007,268 + Rru_A2587 0.27 +2.9 3,007,268 + Rru_A2587 0.27 -1.0 3,007,269 - Rru_A2587 0.28 -1.0 3,007,269 - Rru_A2587 0.28 +1.1 3,007,269 - Rru_A2587 0.28 -0.0 3,007,269 - Rru_A2587 0.28 +0.8 3,007,269 - Rru_A2587 0.28 +0.5 3,007,269 - Rru_A2587 0.28 +2.4 3,007,269 - Rru_A2587 0.28 -0.0 3,007,270 + Rru_A2587 0.28 +0.4 3,007,270 + Rru_A2587 0.28 -0.0 3,007,271 - Rru_A2587 0.28 +1.5 3,007,271 - Rru_A2587 0.28 +0.6 3,007,271 - Rru_A2587 0.28 +0.7 3,007,336 + Rru_A2587 0.34 -0.5 3,007,336 + Rru_A2587 0.34 -0.0 3,007,336 + Rru_A2587 0.34 -0.0 3,007,336 + Rru_A2587 0.34 +1.3 3,007,336 + Rru_A2587 0.34 +1.6 3,007,336 + Rru_A2587 0.34 +0.4 3,007,337 - Rru_A2587 0.34 +1.6 3,007,562 + Rru_A2587 0.56 -1.0 3,007,946 - -0.0 3,007,946 - -1.0 3,007,946 - +0.8 3,008,657 + +0.4 3,009,014 + Rru_A2589 0.32 -0.0 3,009,014 + Rru_A2589 0.32 -0.0 3,009,014 + Rru_A2589 0.32 +1.2 3,009,015 - Rru_A2589 0.32 -1.0 3,009,015 - Rru_A2589 0.32 +1.6 3,009,015 - Rru_A2589 0.32 -0.0 3,009,017 + Rru_A2589 0.32 +0.7 3,009,018 - Rru_A2589 0.32 +0.9 3,009,494 + Rru_A2589 0.67 +1.2
Or see this region's nucleotide sequence