Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2534

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,947,265	-		Rru_A2533	0.27	+1.2
2,947,322	-		Rru_A2533	0.35	-0.0
2,947,322	-		Rru_A2533	0.35	+1.0
2,947,322	-		Rru_A2533	0.35	+1.9
2,947,354	+		Rru_A2533	0.40	-0.0
2,947,354	+		Rru_A2533	0.40	-0.0
2,947,354	+		Rru_A2533	0.40	-0.0
2,947,355	-		Rru_A2533	0.40	+2.8
2,947,355	-		Rru_A2533	0.40	+0.7
2,947,469	-		Rru_A2533	0.56	+1.0
2,947,469	-		Rru_A2533	0.56	+1.6
2,947,469	-		Rru_A2533	0.56	-0.0
2,947,583	-		Rru_A2533	0.73	+1.0
2,947,678	+		Rru_A2533	0.87	-0.0
2,947,758	-				+0.5
2,947,802	+				-0.0
2,947,802	+				+1.6
2,947,802	+				-0.0
2,947,802	+				-0.0
2,947,803	-				-0.0
2,947,803	-				-0.0
2,947,803	-				+2.1
2,947,803	-				-0.0
2,947,803	-				+1.4
2,947,939	-				+2.0
2,948,063	-				+1.7
2,948,063	-				+0.8
2,948,106	+				+0.6
2,948,106	+				-0.0
2,948,106	+				+4.1
2,948,107	-				+1.8
2,948,107	-				+1.5
2,948,107	-				+1.1
2,948,131	+				+0.9
2,948,132	-				-0.0
2,948,169	-				-0.0
2,948,355	+		Rru_A2534	0.30	-0.0
2,948,355	+		Rru_A2534	0.30	+1.4
2,948,355	+		Rru_A2534	0.30	+0.8
2,948,356	-		Rru_A2534	0.30	+1.5
2,948,356	-		Rru_A2534	0.30	+2.6
2,948,356	-		Rru_A2534	0.30	+1.3
2,948,414	-		Rru_A2534	0.37	+1.0
2,948,414	-		Rru_A2534	0.37	+3.0
2,948,428	+		Rru_A2534	0.38	+0.9
2,948,496	+		Rru_A2534	0.46	+1.6
2,948,496	+		Rru_A2534	0.46	-0.0
2,948,496	+		Rru_A2534	0.46	-0.0
2,948,497	-		Rru_A2534	0.46	-0.0
2,948,497	-		Rru_A2534	0.46	-0.0
2,948,497	-		Rru_A2534	0.46	+1.8
2,948,516	-		Rru_A2534	0.48	-0.0
2,948,516	-		Rru_A2534	0.48	+1.3
2,948,516	-		Rru_A2534	0.48	-0.0
2,948,572	-		Rru_A2534	0.54	-0.0
2,948,572	-		Rru_A2534	0.54	+1.1
2,948,580	+		Rru_A2534	0.55	+1.8
2,948,581	-		Rru_A2534	0.55	+1.1
2,948,581	-		Rru_A2534	0.55	+0.8
2,948,665	+		Rru_A2534	0.65	-0.0
2,948,666	-		Rru_A2534	0.65	-1.6
2,948,667	+		Rru_A2534	0.65	+1.5
2,948,667	+		Rru_A2534	0.65	+0.8
2,948,667	+		Rru_A2534	0.65	-0.2
2,948,667	+		Rru_A2534	0.65	-0.0
2,948,667	+		Rru_A2534	0.65	-0.0
2,948,668	-		Rru_A2534	0.65	+1.9
2,948,688	+		Rru_A2534	0.67	-0.0
2,948,688	+		Rru_A2534	0.67	-1.0
2,948,688	+		Rru_A2534	0.67	-0.0
2,948,689	-		Rru_A2534	0.67	+1.0
2,949,052	-				+1.0
2,949,052	-				-0.0
2,949,130	+				+1.0
2,949,130	+				-0.0
2,949,130	+				-0.0
2,949,131	-				+1.5
2,949,131	-				+3.6
2,949,132	+				+1.0
2,949,133	-				-1.0
2,949,156	+				-0.0
2,949,156	+				-0.2
2,949,157	-				-0.0
2,949,157	-				-1.0
2,949,205	+				-0.0
2,949,205	+				+1.0
2,949,205	+				+1.0
2,949,205	+				-0.0
2,949,205	+				+2.0
2,949,207	+				+0.4
2,949,246	+		Rru_A2535	0.11	-0.0
2,949,246	+		Rru_A2535	0.11	+1.1
2,949,246	+		Rru_A2535	0.11	+0.5
2,949,246	+		Rru_A2535	0.11	+1.1
2,949,246	+		Rru_A2535	0.11	+0.7
2,949,247	-		Rru_A2535	0.11	+1.7
2,949,247	-		Rru_A2535	0.11	+3.6
2,949,328	+		Rru_A2535	0.16	+2.6
2,949,328	+		Rru_A2535	0.16	+1.7
2,949,328	+		Rru_A2535	0.16	+1.2
2,949,328	+		Rru_A2535	0.16	+1.2
2,949,329	-		Rru_A2535	0.16	-0.0
2,949,329	-		Rru_A2535	0.16	-0.0
2,949,329	-		Rru_A2535	0.16	+0.5
2,949,329	-		Rru_A2535	0.16	-0.0
2,949,382	+		Rru_A2535	0.19	+2.0
2,949,382	+		Rru_A2535	0.19	-0.0
2,949,382	+		Rru_A2535	0.19	-0.0
2,949,382	+		Rru_A2535	0.19	+1.1
2,949,383	-		Rru_A2535	0.19	-0.0
2,949,383	-		Rru_A2535	0.19	+0.5
2,949,383	-		Rru_A2535	0.19	-0.0
2,949,383	-		Rru_A2535	0.19	+0.6
2,949,383	-		Rru_A2535	0.19	+0.7
2,949,383	-		Rru_A2535	0.19	-0.0
2,949,383	-		Rru_A2535	0.19	+0.1
2,949,424	+		Rru_A2535	0.21	+1.7
2,949,424	+		Rru_A2535	0.21	+0.8
2,949,424	+		Rru_A2535	0.21	+1.6
2,949,425	-		Rru_A2535	0.21	+1.0
2,949,459	+		Rru_A2535	0.23	-0.0
2,949,459	+		Rru_A2535	0.23	-0.0
2,949,459	+		Rru_A2535	0.23	+1.9
2,949,460	-		Rru_A2535	0.24	+1.4
2,949,460	-		Rru_A2535	0.24	+2.8
2,949,460	-		Rru_A2535	0.24	+0.8
2,949,460	-		Rru_A2535	0.24	+0.7
2,949,513	+		Rru_A2535	0.27	+1.5
2,949,513	+		Rru_A2535	0.27	+0.7
2,949,514	-		Rru_A2535	0.27	+1.8
2,949,514	-		Rru_A2535	0.27	+3.0
2,949,519	-		Rru_A2535	0.27	+1.0
2,949,709	-		Rru_A2535	0.39	+0.3
2,949,863	-		Rru_A2535	0.48	+1.6