Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2485

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,887,975	+		Rru_A2484	0.70	+2.0
2,888,230	+		Rru_A2484	0.85	-1.0
2,888,230	+		Rru_A2484	0.85	-1.0
2,888,230	+		Rru_A2484	0.85	-0.2
2,888,231	-		Rru_A2484	0.85	+1.1
2,888,231	-		Rru_A2484	0.85	+0.5
2,888,335	-				-0.0
2,888,335	-				+0.9
2,888,335	-				+1.0
2,888,651	+				+0.7
2,888,651	+				+1.7
2,888,652	-				-0.0
2,888,652	-				-0.0
2,888,829	+		Rru_A2485	0.14	-0.0
2,888,829	+		Rru_A2485	0.14	+2.3
2,888,868	+		Rru_A2485	0.16	+1.1
2,888,869	-		Rru_A2485	0.17	+1.6
2,888,869	-		Rru_A2485	0.17	+1.2
2,888,871	+		Rru_A2485	0.17	-0.0
2,888,871	+		Rru_A2485	0.17	+1.6
2,888,871	+		Rru_A2485	0.17	-1.6
2,888,871	+		Rru_A2485	0.17	+1.8
2,888,872	-		Rru_A2485	0.17	+2.1
2,888,872	-		Rru_A2485	0.17	+0.4
2,888,872	-		Rru_A2485	0.17	+1.5
2,888,950	-		Rru_A2485	0.22	+1.7
2,888,950	-		Rru_A2485	0.22	+1.3
2,888,950	-		Rru_A2485	0.22	-0.0
2,888,958	+		Rru_A2485	0.23	+1.6
2,888,958	+		Rru_A2485	0.23	-0.0
2,888,958	+		Rru_A2485	0.23	+1.5
2,888,958	+		Rru_A2485	0.23	-0.0
2,888,959	-		Rru_A2485	0.23	-0.0
2,888,959	-		Rru_A2485	0.23	+1.3
2,888,959	-		Rru_A2485	0.23	+1.1
2,888,959	-		Rru_A2485	0.23	+1.3
2,888,959	-		Rru_A2485	0.23	+3.8
2,888,959	-		Rru_A2485	0.23	+1.2
2,888,959	-		Rru_A2485	0.23	-1.0
2,888,959	-		Rru_A2485	0.23	+0.3
2,888,960	+		Rru_A2485	0.23	-0.0
2,888,960	+		Rru_A2485	0.23	-0.0
2,888,960	+		Rru_A2485	0.23	-1.6
2,888,973	-		Rru_A2485	0.24	+1.5
2,888,973	-		Rru_A2485	0.24	+1.3
2,889,036	+		Rru_A2485	0.29	-0.0
2,889,037	-		Rru_A2485	0.29	+0.4
2,889,130	+		Rru_A2485	0.35	+1.5
2,889,131	-		Rru_A2485	0.36	+1.6
2,889,131	-		Rru_A2485	0.36	-0.0
2,889,180	+		Rru_A2485	0.39	-0.0
2,889,181	-		Rru_A2485	0.39	+1.0
2,889,181	-		Rru_A2485	0.39	-0.0
2,889,232	-		Rru_A2485	0.43	-0.0
2,889,313	-		Rru_A2485	0.49	+1.4
2,889,313	-		Rru_A2485	0.49	+2.3
2,889,441	+		Rru_A2485	0.58	+1.9
2,889,441	+		Rru_A2485	0.58	+2.3
2,889,442	-		Rru_A2485	0.58	+0.8
2,889,627	+		Rru_A2485	0.71	-0.0
2,889,627	+		Rru_A2485	0.71	-0.0
2,889,628	-		Rru_A2485	0.71	+1.7
2,889,734	+		Rru_A2485	0.79	-0.0
2,889,735	-		Rru_A2485	0.79	+1.7
2,889,756	+		Rru_A2485	0.81	-0.0
2,889,757	-		Rru_A2485	0.81	+2.4
2,889,944	+				+1.7
2,889,945	-				+2.3
2,889,945	-				+1.0
2,889,945	-				+1.7
2,889,984	+				-0.0
2,889,985	-				+0.9
2,889,985	-				+1.1
2,889,985	-				+1.6
2,889,985	-				+1.5
2,890,162	+		Rru_A2486	0.15	+0.9
2,890,162	+		Rru_A2486	0.15	+2.4
2,890,162	+		Rru_A2486	0.15	+1.3
2,890,753	+		Rru_A2486	0.76	-0.5
2,890,831	-		Rru_A2486	0.84	+1.8
2,890,909	+				+2.0
2,890,910	-				+1.1
2,890,910	-				+1.5
2,890,910	-				+1.5
2,890,987	+				+1.3
2,890,987	+				-0.0
2,890,987	+				+1.3