Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2404

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,798,241	+		Rru_A2403	0.37	-2.6
2,798,242	-		Rru_A2403	0.38	-2.6
2,798,363	-		Rru_A2403	0.48	-0.3
2,798,363	-		Rru_A2403	0.48	-0.8
2,798,363	-		Rru_A2403	0.48	-0.0
2,798,539	+		Rru_A2403	0.64	-0.0
2,798,539	+		Rru_A2403	0.64	-0.0
2,798,539	+		Rru_A2403	0.64	-1.2
2,798,540	-		Rru_A2403	0.64	-0.0
2,798,540	-		Rru_A2403	0.64	-1.4
2,798,540	-		Rru_A2403	0.64	-0.0
2,798,540	-		Rru_A2403	0.64	-1.0
2,798,540	-		Rru_A2403	0.64	-1.0
2,798,587	+		Rru_A2403	0.69	-2.4
2,798,587	+		Rru_A2403	0.69	-0.6
2,798,587	+		Rru_A2403	0.69	-2.4
2,798,587	+		Rru_A2403	0.69	-0.6
2,798,588	-		Rru_A2403	0.69	-0.0
2,798,588	-		Rru_A2403	0.69	-2.0
2,798,588	-		Rru_A2403	0.69	-1.0
2,798,588	-		Rru_A2403	0.69	-3.0
2,798,588	-		Rru_A2403	0.69	-0.7
2,798,653	+		Rru_A2403	0.75	-1.7
2,798,653	+		Rru_A2403	0.75	-0.0
2,798,653	+		Rru_A2403	0.75	-0.0
2,798,653	+		Rru_A2403	0.75	-0.2
2,798,653	+		Rru_A2403	0.75	-0.0
2,798,653	+		Rru_A2403	0.75	-1.0
2,798,653	+		Rru_A2403	0.75	-0.0
2,798,653	+		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	+1.5
2,798,654	-		Rru_A2403	0.75	-2.0
2,798,654	-		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	+1.0
2,798,654	-		Rru_A2403	0.75	-0.3
2,798,654	-		Rru_A2403	0.75	-2.6
2,798,654	-		Rru_A2403	0.75	-2.6
2,798,654	-		Rru_A2403	0.75	-1.6
2,798,654	-		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	-0.0
2,798,654	-		Rru_A2403	0.75	-0.7
2,798,710	+		Rru_A2403	0.80	-0.0
2,798,710	+		Rru_A2403	0.80	-0.0
2,798,710	+		Rru_A2403	0.80	-0.7
2,798,711	-		Rru_A2403	0.80	+0.4
2,798,711	-		Rru_A2403	0.80	-1.0
2,798,968	+				-0.0
2,798,968	+				-0.0
2,798,968	+				+1.1
2,798,968	+				-0.0
2,798,968	+				+2.1
2,798,969	-				-1.0
2,799,036	+				-1.3
2,799,036	+				-0.0
2,799,037	-				-1.0
2,799,037	-				-0.0
2,799,037	-				-0.0
2,799,037	-				-0.0
2,799,037	-				-1.8
2,799,037	-				-0.4
2,799,037	-				-1.6
2,799,037	-				-0.0
2,799,295	+		Rru_A2404	0.29	-0.0
2,799,295	+		Rru_A2404	0.29	-1.0
2,799,328	+		Rru_A2404	0.33	-0.7
2,799,328	+		Rru_A2404	0.33	-1.0
2,799,329	-		Rru_A2404	0.33	-0.0
2,799,422	-		Rru_A2404	0.44	-0.0
2,799,422	-		Rru_A2404	0.44	-1.5
2,799,556	+		Rru_A2404	0.59	-0.0
2,799,558	+		Rru_A2404	0.59	-0.0
2,799,558	+		Rru_A2404	0.59	-1.0
2,799,559	-		Rru_A2404	0.59	+0.4
2,799,559	-		Rru_A2404	0.59	-1.6
2,799,559	-		Rru_A2404	0.59	-0.0
2,799,559	-		Rru_A2404	0.59	-1.0
2,799,604	+		Rru_A2404	0.65	+1.0
2,799,604	+		Rru_A2404	0.65	-1.6
2,799,613	+		Rru_A2404	0.66	-0.0
2,799,613	+		Rru_A2404	0.66	-0.0
2,799,613	+		Rru_A2404	0.66	-0.0
2,799,613	+		Rru_A2404	0.66	-1.4
2,799,613	+		Rru_A2404	0.66	-0.0
2,799,613	+		Rru_A2404	0.66	-0.0
2,799,614	-		Rru_A2404	0.66	-0.7
2,799,614	-		Rru_A2404	0.66	-0.0
2,799,614	-		Rru_A2404	0.66	-1.0
2,799,614	-		Rru_A2404	0.66	-0.7
2,799,614	-		Rru_A2404	0.66	-1.0
2,799,614	-		Rru_A2404	0.66	-1.0
2,799,614	-		Rru_A2404	0.66	-0.0
2,799,614	-		Rru_A2404	0.66	-0.9
2,799,767	-		Rru_A2404	0.83	-2.4
2,800,250	+		Rru_A2405	0.13	+1.0
2,800,250	+		Rru_A2405	0.13	-0.0
2,800,251	-		Rru_A2405	0.13	+1.0
2,800,251	-		Rru_A2405	0.13	+0.7
2,800,274	+		Rru_A2405	0.14	+2.0
2,800,636	+		Rru_A2405	0.32	-0.0
2,800,658	+		Rru_A2405	0.33	+1.4
2,800,877	+		Rru_A2405	0.44	+1.3
2,800,877	+		Rru_A2405	0.44	-0.0
2,800,877	+		Rru_A2405	0.44	+1.4
2,800,877	+		Rru_A2405	0.44	+1.7
2,800,903	+		Rru_A2405	0.45	+1.2