Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2366 and Rru_A2367 are separated by 179 nucleotides Rru_A2367 and Rru_A2368 overlap by 4 nucleotides Rru_A2368 and Rru_A2369 overlap by 55 nucleotides
Rru_A2366: Rru_A2366 - chemotaxis sensory transducer (NCBI), at 2,757,614 to 2,759,296
_A2366
Rru_A2367: Rru_A2367 - Response regulator receiver domain protein (CheY) (NCBI), at 2,759,476 to 2,759,877
_A2367
Rru_A2368: Rru_A2368 - transcriptional regulator with PAS/PAC domain (NCBI), at 2,759,874 to 2,760,743
_A2368
Rru_A2369: Rru_A2369 - hypothetical protein (NCBI), at 2,760,689 to 2,761,843
_A2369
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2759.205 kb on + strand at 2759.205 kb on + strand at 2759.332 kb on - strand at 2759.484 kb on + strand at 2759.719 kb on + strand, within Rru_A2367 at 2759.720 kb on - strand, within Rru_A2367 at 2759.720 kb on - strand, within Rru_A2367 at 2759.982 kb on + strand, within Rru_A2368 at 2759.982 kb on + strand, within Rru_A2368 at 2759.982 kb on + strand, within Rru_A2368 at 2759.983 kb on - strand, within Rru_A2368 at 2760.333 kb on + strand, within Rru_A2368 at 2760.411 kb on + strand, within Rru_A2368 at 2760.411 kb on + strand, within Rru_A2368 at 2760.411 kb on + strand, within Rru_A2368 at 2760.412 kb on - strand, within Rru_A2368 at 2760.741 kb on + strand at 2760.741 kb on + strand at 2760.742 kb on - strand at 2760.742 kb on - strand at 2760.742 kb on - strand at 2761.051 kb on - strand, within Rru_A2369 at 2761.167 kb on + strand, within Rru_A2369 at 2761.167 kb on + strand, within Rru_A2369 at 2761.167 kb on + strand, within Rru_A2369 at 2761.168 kb on - strand, within Rru_A2369 at 2761.477 kb on + strand, within Rru_A2369 at 2761.477 kb on + strand, within Rru_A2369 at 2761.478 kb on - strand, within Rru_A2369 at 2761.479 kb on + strand, within Rru_A2369 at 2761.480 kb on - strand, within Rru_A2369
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,759,205 + -0.0 2,759,205 + -0.0 2,759,332 - -0.0 2,759,484 + +1.0 2,759,719 + Rru_A2367 0.60 -0.0 2,759,720 - Rru_A2367 0.61 -0.0 2,759,720 - Rru_A2367 0.61 -0.0 2,759,982 + Rru_A2368 0.12 -0.0 2,759,982 + Rru_A2368 0.12 +1.1 2,759,982 + Rru_A2368 0.12 +1.1 2,759,983 - Rru_A2368 0.13 +0.7 2,760,333 + Rru_A2368 0.53 +0.5 2,760,411 + Rru_A2368 0.62 -0.0 2,760,411 + Rru_A2368 0.62 +0.9 2,760,411 + Rru_A2368 0.62 +0.4 2,760,412 - Rru_A2368 0.62 +0.9 2,760,741 + +0.6 2,760,741 + +1.8 2,760,742 - +1.9 2,760,742 - -0.0 2,760,742 - -0.0 2,761,051 - Rru_A2369 0.31 +2.1 2,761,167 + Rru_A2369 0.41 +1.1 2,761,167 + Rru_A2369 0.41 +0.8 2,761,167 + Rru_A2369 0.41 +3.0 2,761,168 - Rru_A2369 0.41 -0.0 2,761,477 + Rru_A2369 0.68 +1.1 2,761,477 + Rru_A2369 0.68 -0.0 2,761,478 - Rru_A2369 0.68 +1.1 2,761,479 + Rru_A2369 0.68 +1.3 2,761,480 - Rru_A2369 0.68 -0.0
Or see this region's nucleotide sequence