Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2230 and Rru_A2231 overlap by 10 nucleotides Rru_A2231 and Rru_A2232 are separated by 286 nucleotides
Rru_A2230: Rru_A2230 - Glycosyl transferase, family 9 (NCBI), at 2,589,471 to 2,590,463
_A2230
Rru_A2231: Rru_A2231 - Glycosyl transferase, family 25 (NCBI), at 2,590,454 to 2,591,221
_A2231
Rru_A2232: Rru_A2232 - Two Component Transcriptional Regulator, LuxR family (NCBI), at 2,591,508 to 2,592,146
_A2232
Position (kb)
2590
2591
2592 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2590.473 kb on + strand at 2590.473 kb on + strand at 2590.473 kb on + strand at 2590.661 kb on - strand, within Rru_A2231 at 2590.661 kb on - strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.732 kb on - strand, within Rru_A2231 at 2590.732 kb on - strand, within Rru_A2231 at 2590.756 kb on + strand, within Rru_A2231 at 2590.768 kb on - strand, within Rru_A2231 at 2590.813 kb on + strand, within Rru_A2231 at 2590.850 kb on + strand, within Rru_A2231 at 2590.851 kb on - strand, within Rru_A2231 at 2591.011 kb on - strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.073 kb on + strand, within Rru_A2231 at 2591.074 kb on - strand, within Rru_A2231 at 2591.074 kb on - strand, within Rru_A2231 at 2591.266 kb on + strand at 2591.509 kb on + strand at 2591.510 kb on - strand at 2591.510 kb on - strand at 2591.776 kb on + strand, within Rru_A2232 at 2591.844 kb on - strand, within Rru_A2232
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,590,473 + -0.1 2,590,473 + -0.3 2,590,473 + +0.6 2,590,661 - Rru_A2231 0.27 +2.3 2,590,661 - Rru_A2231 0.27 +0.9 2,590,731 + Rru_A2231 0.36 +0.8 2,590,731 + Rru_A2231 0.36 -0.1 2,590,731 + Rru_A2231 0.36 -1.1 2,590,731 + Rru_A2231 0.36 +0.5 2,590,732 - Rru_A2231 0.36 -0.1 2,590,732 - Rru_A2231 0.36 +0.8 2,590,756 + Rru_A2231 0.39 +0.0 2,590,768 - Rru_A2231 0.41 +0.5 2,590,813 + Rru_A2231 0.47 +0.9 2,590,850 + Rru_A2231 0.52 +0.5 2,590,851 - Rru_A2231 0.52 -0.1 2,591,011 - Rru_A2231 0.73 -0.1 2,591,046 + Rru_A2231 0.77 +1.5 2,591,046 + Rru_A2231 0.77 +0.9 2,591,046 + Rru_A2231 0.77 +0.7 2,591,046 + Rru_A2231 0.77 +0.1 2,591,046 + Rru_A2231 0.77 +2.8 2,591,046 + Rru_A2231 0.77 -1.1 2,591,046 + Rru_A2231 0.77 -0.1 2,591,047 - Rru_A2231 0.77 -0.1 2,591,047 - Rru_A2231 0.77 -1.6 2,591,047 - Rru_A2231 0.77 -1.1 2,591,073 + Rru_A2231 0.81 +0.9 2,591,074 - Rru_A2231 0.81 +0.8 2,591,074 - Rru_A2231 0.81 -0.1 2,591,266 + +1.4 2,591,509 + +1.0 2,591,510 - -0.1 2,591,510 - +0.3 2,591,776 + Rru_A2232 0.42 +2.5 2,591,844 - Rru_A2232 0.53 -0.1
Or see this region's nucleotide sequence