Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2223 and Rru_A2224 are separated by 210 nucleotides Rru_A2224 and Rru_A2225 overlap by 4 nucleotides Rru_A2225 and Rru_A2226 are separated by 56 nucleotides
Rru_A2223: Rru_A2223 - Branched-chain amino acid aminotransferase I (NCBI), at 2,582,482 to 2,583,393
_A2223
Rru_A2224: Rru_A2224 - Transcriptional Regulator, MarR family (NCBI), at 2,583,604 to 2,584,143
_A2224
Rru_A2225: Rru_A2225 - Two component Transcriptional regulator, Winged helix family (NCBI), at 2,584,140 to 2,584,880
_A2225
Rru_A2226: Rru_A2226 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 2,584,937 to 2,586,343
_A2226
Position (kb)
2584
2585 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2583.174 kb on - strand, within Rru_A2223 at 2583.287 kb on + strand, within Rru_A2223 at 2583.287 kb on + strand, within Rru_A2223 at 2583.287 kb on + strand, within Rru_A2223 at 2583.288 kb on - strand, within Rru_A2223 at 2583.516 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.558 kb on + strand at 2583.559 kb on - strand at 2583.567 kb on + strand at 2583.568 kb on - strand at 2583.763 kb on + strand, within Rru_A2224 at 2583.763 kb on + strand, within Rru_A2224
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 2,583,174 - Rru_A2223 0.76 +1.4 2,583,287 + Rru_A2223 0.88 -0.0 2,583,287 + Rru_A2223 0.88 -1.2 2,583,287 + Rru_A2223 0.88 +0.9 2,583,288 - Rru_A2223 0.88 +1.5 2,583,516 + +1.4 2,583,558 + +0.5 2,583,558 + +0.7 2,583,558 + +1.3 2,583,558 + +2.6 2,583,558 + -0.0 2,583,558 + -0.5 2,583,558 + -0.0 2,583,559 - +2.5 2,583,567 + -0.0 2,583,568 - -0.0 2,583,763 + Rru_A2224 0.29 +4.6 2,583,763 + Rru_A2224 0.29 +1.1
Or see this region's nucleotide sequence