Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2225

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2223 and Rru_A2224 are separated by 210 nucleotidesRru_A2224 and Rru_A2225 overlap by 4 nucleotidesRru_A2225 and Rru_A2226 are separated by 56 nucleotides Rru_A2223: Rru_A2223 - Branched-chain amino acid aminotransferase I (NCBI), at 2,582,482 to 2,583,393 _A2223 Rru_A2224: Rru_A2224 - Transcriptional Regulator, MarR family (NCBI), at 2,583,604 to 2,584,143 _A2224 Rru_A2225: Rru_A2225 - Two component Transcriptional regulator, Winged helix family (NCBI), at 2,584,140 to 2,584,880 _A2225 Rru_A2226: Rru_A2226 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 2,584,937 to 2,586,343 _A2226 Position (kb) 2584 2585Strain fitness (log2 ratio) -1 0 1 2 3 4at 2583.174 kb on - strand, within Rru_A2223at 2583.287 kb on + strand, within Rru_A2223at 2583.287 kb on + strand, within Rru_A2223at 2583.287 kb on + strand, within Rru_A2223at 2583.288 kb on - strand, within Rru_A2223at 2583.516 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.558 kb on + strandat 2583.559 kb on - strandat 2583.567 kb on + strandat 2583.568 kb on - strandat 2583.763 kb on + strand, within Rru_A2224at 2583.763 kb on + strand, within Rru_A2224

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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2,583,174 - Rru_A2223 0.76 +1.4
2,583,287 + Rru_A2223 0.88 -0.0
2,583,287 + Rru_A2223 0.88 -1.2
2,583,287 + Rru_A2223 0.88 +0.9
2,583,288 - Rru_A2223 0.88 +1.5
2,583,516 + +1.4
2,583,558 + +0.5
2,583,558 + +0.7
2,583,558 + +1.3
2,583,558 + +2.6
2,583,558 + -0.0
2,583,558 + -0.5
2,583,558 + -0.0
2,583,559 - +2.5
2,583,567 + -0.0
2,583,568 - -0.0
2,583,763 + Rru_A2224 0.29 +4.6
2,583,763 + Rru_A2224 0.29 +1.1

Or see this region's nucleotide sequence