Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2073

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2072 and Rru_A2073 are separated by 123 nucleotidesRru_A2073 and Rru_A2074 are separated by 146 nucleotides Rru_A2072: Rru_A2072 - Aspartyl-tRNA synthetase (NCBI), at 2,397,395 to 2,399,215 _A2072 Rru_A2073: Rru_A2073 - Ribonuclease D (NCBI), at 2,399,339 to 2,400,499 _A2073 Rru_A2074: Rru_A2074 - Thiosulphate-binding protein (NCBI), at 2,400,646 to 2,401,740 _A2074 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -1 0 1 2 3at 2399.327 kb on + strandat 2400.497 kb on + strandat 2400.497 kb on + strandat 2400.498 kb on - strandat 2400.498 kb on - strandat 2400.498 kb on - strandat 2400.498 kb on - strandat 2400.498 kb on - strandat 2400.500 kb on + strandat 2400.647 kb on + strandat 2400.647 kb on + strandat 2400.759 kb on + strand, within Rru_A2074at 2400.760 kb on - strand, within Rru_A2074at 2400.866 kb on + strand, within Rru_A2074at 2400.866 kb on + strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.867 kb on - strand, within Rru_A2074at 2400.881 kb on + strand, within Rru_A2074at 2400.882 kb on - strand, within Rru_A2074at 2400.882 kb on - strand, within Rru_A2074at 2401.142 kb on + strand, within Rru_A2074at 2401.142 kb on + strand, within Rru_A2074at 2401.143 kb on - strand, within Rru_A2074at 2401.344 kb on + strand, within Rru_A2074at 2401.344 kb on + strand, within Rru_A2074at 2401.344 kb on + strand, within Rru_A2074at 2401.345 kb on - strand, within Rru_A2074at 2401.345 kb on - strand, within Rru_A2074at 2401.346 kb on + strand, within Rru_A2074at 2401.346 kb on + strand, within Rru_A2074at 2401.346 kb on + strand, within Rru_A2074at 2401.346 kb on + strand, within Rru_A2074at 2401.347 kb on - strand, within Rru_A2074at 2401.361 kb on + strand, within Rru_A2074at 2401.361 kb on + strand, within Rru_A2074at 2401.420 kb on - strand, within Rru_A2074

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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2,399,327 + -0.1
2,400,497 + +0.5
2,400,497 + +1.7
2,400,498 - +1.6
2,400,498 - +1.5
2,400,498 - +1.4
2,400,498 - +1.8
2,400,498 - +3.4
2,400,500 + -0.1
2,400,647 + +1.0
2,400,647 + +0.6
2,400,759 + Rru_A2074 0.10 -0.1
2,400,760 - Rru_A2074 0.10 +1.2
2,400,866 + Rru_A2074 0.20 -0.1
2,400,866 + Rru_A2074 0.20 +2.4
2,400,867 - Rru_A2074 0.20 -0.1
2,400,867 - Rru_A2074 0.20 -0.1
2,400,867 - Rru_A2074 0.20 +0.8
2,400,867 - Rru_A2074 0.20 -0.1
2,400,867 - Rru_A2074 0.20 +1.0
2,400,867 - Rru_A2074 0.20 +0.9
2,400,881 + Rru_A2074 0.21 -0.1
2,400,882 - Rru_A2074 0.22 +1.5
2,400,882 - Rru_A2074 0.22 -0.1
2,401,142 + Rru_A2074 0.45 -0.1
2,401,142 + Rru_A2074 0.45 +0.7
2,401,143 - Rru_A2074 0.45 +2.5
2,401,344 + Rru_A2074 0.64 +1.3
2,401,344 + Rru_A2074 0.64 +1.1
2,401,344 + Rru_A2074 0.64 -0.1
2,401,345 - Rru_A2074 0.64 -0.1
2,401,345 - Rru_A2074 0.64 +1.5
2,401,346 + Rru_A2074 0.64 -1.6
2,401,346 + Rru_A2074 0.64 +1.3
2,401,346 + Rru_A2074 0.64 +1.2
2,401,346 + Rru_A2074 0.64 -0.1
2,401,347 - Rru_A2074 0.64 +1.9
2,401,361 + Rru_A2074 0.65 +1.2
2,401,361 + Rru_A2074 0.65 -0.1
2,401,420 - Rru_A2074 0.71 +0.9

Or see this region's nucleotide sequence