Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2015

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,329,231	+		Rru_A2014	0.59	+1.5
2,329,256	+		Rru_A2014	0.61	-0.1
2,329,256	+		Rru_A2014	0.61	+0.9
2,329,257	-		Rru_A2014	0.61	+2.0
2,329,258	+		Rru_A2014	0.61	+0.6
2,329,313	+		Rru_A2014	0.64	-0.1
2,329,369	+		Rru_A2014	0.68	+0.4
2,329,369	+		Rru_A2014	0.68	-1.1
2,329,370	-		Rru_A2014	0.68	+0.7
2,329,370	-		Rru_A2014	0.68	-0.1
2,329,370	-		Rru_A2014	0.68	-0.1
2,329,421	+		Rru_A2014	0.71	+1.1
2,329,424	-		Rru_A2014	0.71	-0.1
2,329,471	+		Rru_A2014	0.74	-0.1
2,329,471	+		Rru_A2014	0.74	-1.1
2,329,471	+		Rru_A2014	0.74	+2.5
2,329,472	-		Rru_A2014	0.74	-0.1
2,329,492	+		Rru_A2014	0.75	+1.6
2,329,493	-		Rru_A2014	0.75	+1.1
2,329,493	-		Rru_A2014	0.75	+1.8
2,329,528	+		Rru_A2014	0.78	-0.1
2,329,529	-		Rru_A2014	0.78	+1.7
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	+1.2
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	-0.1
2,329,705	+		Rru_A2014	0.89	+2.2
2,329,706	-		Rru_A2014	0.89	+2.8
2,329,706	-		Rru_A2014	0.89	+0.4
2,329,706	-		Rru_A2014	0.89	+2.3
2,329,706	-		Rru_A2014	0.89	+2.5
2,329,886	+				+1.2
2,330,018	+				-0.1
2,330,254	+				+1.3
2,330,476	+		Rru_A2015	0.29	-0.1
2,330,476	+		Rru_A2015	0.29	+1.3
2,330,476	+		Rru_A2015	0.29	+1.1
2,330,476	+		Rru_A2015	0.29	+1.5
2,330,476	+		Rru_A2015	0.29	+1.6
2,330,476	+		Rru_A2015	0.29	+0.7
2,330,477	-		Rru_A2015	0.29	+0.2
2,330,477	-		Rru_A2015	0.29	+0.9
2,330,477	-		Rru_A2015	0.29	-0.7
2,330,488	+		Rru_A2015	0.30	+0.1
2,330,515	+		Rru_A2015	0.33	+0.6
2,330,516	-		Rru_A2015	0.33	-1.6
2,331,107	-				+0.8
2,331,107	-				+0.4
2,331,107	-				+1.1
2,331,107	-				-0.1
2,331,107	-				+1.9
2,331,107	-				+1.0
2,331,175	-				+1.4
2,331,175	-				+0.4
2,331,175	-				+1.5
2,331,190	+				+3.0
2,331,190	+				-0.1
2,331,190	+				-0.1
2,331,190	+				+0.6
2,331,191	-				-0.1
2,331,191	-				-1.6
2,331,191	-				-0.1
2,331,191	-				-0.1
2,331,191	-				-0.1
2,331,191	-				+0.7
2,331,247	+		Rru_A2016	0.19	-0.4
2,331,248	-		Rru_A2016	0.19	+1.1
2,331,575	+				+1.8
2,331,676	+				+2.3
2,331,677	-				+2.4
2,331,677	-				+1.5
2,331,808	+				-0.1
2,331,809	-				-0.1
2,331,809	-				-0.1
2,331,832	-		Rru_A2017	0.14	+2.2
2,331,856	+		Rru_A2017	0.24	+0.9
2,331,867	-		Rru_A2017	0.28	+1.4
2,331,867	-		Rru_A2017	0.28	+1.5
2,331,955	+		Rru_A2017	0.65	+1.8
2,331,955	+		Rru_A2017	0.65	+0.7
2,331,956	-		Rru_A2017	0.65	+1.0
2,332,029	+				-0.1
2,332,030	-				-0.4
2,332,076	+				+1.9
2,332,077	-				-0.1
2,332,077	-				+2.5
2,332,077	-				+1.1
2,332,134	+				+1.8
2,332,135	-				+0.5
2,332,170	+		Rru_A2018	0.12	+2.3