Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1935

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
2,240,857	-				+2.5
2,240,909	-				+1.8
2,240,914	-				+2.4
2,241,059	-		Rru_A1934	0.17	+2.4
2,241,118	+		Rru_A1934	0.27	+0.9
2,241,118	+		Rru_A1934	0.27	+0.7
2,241,119	-		Rru_A1934	0.27	+1.0
2,241,119	-		Rru_A1934	0.27	-0.1
2,241,121	+		Rru_A1934	0.27	+1.7
2,241,121	+		Rru_A1934	0.27	-0.1
2,241,121	+		Rru_A1934	0.27	-0.1
2,241,121	+		Rru_A1934	0.27	+1.0
2,241,121	+		Rru_A1934	0.27	+3.8
2,241,121	+		Rru_A1934	0.27	-0.1
2,241,121	+		Rru_A1934	0.27	+2.7
2,241,121	+		Rru_A1934	0.27	+0.7
2,241,121	+		Rru_A1934	0.27	+1.7
2,241,121	+		Rru_A1934	0.27	+1.5
2,241,122	-		Rru_A1934	0.27	-0.1
2,241,122	-		Rru_A1934	0.27	+1.9
2,241,122	-		Rru_A1934	0.27	+2.2
2,241,122	-		Rru_A1934	0.27	-1.1
2,241,124	+		Rru_A1934	0.28	-0.1
2,241,124	+		Rru_A1934	0.28	+1.9
2,241,124	+		Rru_A1934	0.28	+1.9
2,241,124	+		Rru_A1934	0.28	-0.1
2,241,124	+		Rru_A1934	0.28	+1.9
2,241,124	+		Rru_A1934	0.28	-1.1
2,241,124	+		Rru_A1934	0.28	-0.1
2,241,124	+		Rru_A1934	0.28	+1.7
2,241,124	+		Rru_A1934	0.28	+1.1
2,241,124	+		Rru_A1934	0.28	+0.9
2,241,124	+		Rru_A1934	0.28	+1.4
2,241,125	-		Rru_A1934	0.28	-0.1
2,241,125	-		Rru_A1934	0.28	+2.8
2,241,256	+		Rru_A1934	0.49	+3.4
2,241,257	-		Rru_A1934	0.49	+2.3
2,241,257	-		Rru_A1934	0.49	+4.8
2,241,257	-		Rru_A1934	0.49	+2.9
2,241,257	-		Rru_A1934	0.49	+2.1
2,241,484	+		Rru_A1934	0.87	+0.9
2,241,484	+		Rru_A1934	0.87	+1.4
2,241,485	-		Rru_A1934	0.87	+1.4
2,241,485	-		Rru_A1934	0.87	+2.3
2,241,485	-		Rru_A1934	0.87	-0.1
2,241,485	-		Rru_A1934	0.87	+0.5
2,241,485	-		Rru_A1934	0.87	+2.5
2,241,485	-		Rru_A1934	0.87	+2.0
2,241,526	+				+1.4
2,241,526	+				+2.6
2,241,670	+				-0.1
2,241,670	+				-0.1
2,241,670	+				+0.8
2,241,671	-				+0.9
2,241,671	-				+1.9
2,241,792	+		Rru_A1935	0.18	+1.9
2,241,793	-		Rru_A1935	0.18	+0.8
2,241,793	-		Rru_A1935	0.18	+2.3
2,241,793	-		Rru_A1935	0.18	-0.1
2,241,793	-		Rru_A1935	0.18	+1.9
2,241,793	-		Rru_A1935	0.18	+2.1
2,241,993	+		Rru_A1935	0.45	-0.1
2,241,994	-		Rru_A1935	0.45	+1.4
2,241,994	-		Rru_A1935	0.45	-0.1
2,241,994	-		Rru_A1935	0.45	+2.5
2,241,994	-		Rru_A1935	0.45	+2.5
2,241,995	+		Rru_A1935	0.45	-1.6
2,241,996	-		Rru_A1935	0.45	-0.1
2,242,264	-		Rru_A1935	0.80	-0.1
2,242,264	-		Rru_A1935	0.80	+1.0
2,242,264	-		Rru_A1935	0.80	+0.8
2,242,264	-		Rru_A1935	0.80	+0.7
2,242,283	+		Rru_A1935	0.82	+1.8
2,242,283	+		Rru_A1935	0.82	+1.2
2,242,283	+		Rru_A1935	0.82	+1.5
2,242,284	-		Rru_A1935	0.83	+1.5
2,242,284	-		Rru_A1935	0.83	-0.1
2,242,284	-		Rru_A1935	0.83	+1.0
2,242,317	+		Rru_A1935	0.87	-0.1
2,242,317	+		Rru_A1935	0.87	-2.6
2,242,317	+		Rru_A1935	0.87	-0.1
2,242,317	+		Rru_A1935	0.87	+1.5
2,242,317	+		Rru_A1935	0.87	-0.1
2,242,317	+		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	+1.5
2,242,318	-		Rru_A1935	0.87	+1.8
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,318	-		Rru_A1935	0.87	-0.1
2,242,319	+		Rru_A1935	0.87	+0.5
2,242,319	+		Rru_A1935	0.87	+0.9
2,242,319	+		Rru_A1935	0.87	+1.2
2,242,319	+		Rru_A1935	0.87	-0.1
2,242,319	+		Rru_A1935	0.87	+2.7
2,242,319	+		Rru_A1935	0.87	+1.4
2,242,319	+		Rru_A1935	0.87	-0.1
2,242,320	-		Rru_A1935	0.87	-0.1
2,242,320	-		Rru_A1935	0.87	+0.4
2,242,320	-		Rru_A1935	0.87	+0.1
2,242,320	-		Rru_A1935	0.87	-0.1
2,242,320	-		Rru_A1935	0.87	+1.3
2,242,373	+				+1.5
2,242,374	-				+1.9
2,242,374	-				+1.2
2,242,374	-				+0.9
2,242,556	+				+1.5
2,242,596	-				-0.1
2,242,659	+				-0.1
2,242,660	-				-0.1
2,242,660	-				+1.2
2,242,660	-				-0.1
2,242,671	+				-0.1
2,242,671	+				+1.0
2,242,672	-				+1.4
2,242,752	+				+1.4
2,242,752	+				-0.1
2,242,752	+				-0.1
2,242,753	-				+0.2
2,242,753	-				+0.2
2,242,753	-				+1.1
2,242,753	-				+0.4
2,242,753	-				+0.4
2,242,756	+				+0.7
2,242,804	+				+1.4
2,242,804	+				-0.1
2,242,805	-				+1.2
2,242,806	+				+1.0
2,242,806	+				+2.2
2,242,806	+				+0.9
2,242,806	+				-1.6
2,242,807	-				+2.3
2,242,807	-				-0.1
2,242,914	+		Rru_A1936	0.14	+3.2
2,242,914	+		Rru_A1936	0.14	+2.1
2,242,914	+		Rru_A1936	0.14	+2.2
2,242,914	+		Rru_A1936	0.14	+1.7
2,242,914	+		Rru_A1936	0.14	+0.7
2,242,914	+		Rru_A1936	0.14	-0.1
2,242,915	-		Rru_A1936	0.14	+1.2
2,242,915	-		Rru_A1936	0.14	+2.1
2,242,915	-		Rru_A1936	0.14	+1.6
2,242,915	-		Rru_A1936	0.14	+0.9
2,242,915	-		Rru_A1936	0.14	+1.9
2,242,915	-		Rru_A1936	0.14	+0.5
2,243,014	-		Rru_A1936	0.19	+1.8
2,243,022	+		Rru_A1936	0.20	-0.1
2,243,023	-		Rru_A1936	0.20	+0.7
2,243,091	+		Rru_A1936	0.23	+1.7
2,243,092	-		Rru_A1936	0.23	+1.0
2,243,196	+		Rru_A1936	0.29	+0.7
2,243,197	-		Rru_A1936	0.29	+1.6
2,243,197	-		Rru_A1936	0.29	+0.7
2,243,197	-		Rru_A1936	0.29	-0.1
2,243,263	-		Rru_A1936	0.33	-0.1
2,243,280	+		Rru_A1936	0.34	+1.6
2,243,280	+		Rru_A1936	0.34	-0.1
2,243,281	-		Rru_A1936	0.34	+0.9
2,243,281	-		Rru_A1936	0.34	+1.0
2,243,296	+		Rru_A1936	0.35	-0.1
2,243,382	+		Rru_A1936	0.40	+1.1
2,243,383	-		Rru_A1936	0.40	+1.2