Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1634

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,924,487	+		Rru_A1632	0.82	-0.1
1,924,487	+		Rru_A1632	0.82	+0.5
1,924,791	+				+1.2
1,924,791	+				-0.1
1,924,791	+				-0.1
1,924,792	-				-0.1
1,924,792	-				-0.1
1,924,792	-				-0.1
1,924,792	-				-1.1
1,924,794	+				-0.1
1,924,794	+				-0.1
1,924,794	+				-0.1
1,924,794	+				-0.1
1,924,794	+				+1.4
1,924,795	-				+1.5
1,924,795	-				-0.1
1,924,795	-				-0.1
1,924,795	-				-0.1
1,924,811	-		Rru_A1633	0.12	-0.1
1,925,184	+		Rru_A1634	0.11	-0.1
1,925,185	-		Rru_A1634	0.11	+3.1
1,925,205	-		Rru_A1634	0.13	+0.9
1,925,205	-		Rru_A1634	0.13	+0.9
1,925,478	+		Rru_A1634	0.31	-0.1
1,925,478	+		Rru_A1634	0.31	+1.5
1,925,478	+		Rru_A1634	0.31	+1.1
1,925,478	+		Rru_A1634	0.31	+0.7
1,925,479	-		Rru_A1634	0.31	+1.0
1,925,479	-		Rru_A1634	0.31	-0.1
1,925,537	+		Rru_A1634	0.35	+1.4
1,925,537	+		Rru_A1634	0.35	-0.1
1,925,538	-		Rru_A1634	0.35	-0.1
1,925,538	-		Rru_A1634	0.35	-0.1
1,925,538	-		Rru_A1634	0.35	-0.1
1,925,561	+		Rru_A1634	0.37	-0.1
1,925,561	+		Rru_A1634	0.37	+1.7
1,925,562	-		Rru_A1634	0.37	-0.1
1,925,698	+		Rru_A1634	0.46	+0.9
1,925,699	-		Rru_A1634	0.46	-0.1
1,925,699	-		Rru_A1634	0.46	-0.1
1,925,925	+		Rru_A1634	0.62	+1.6
1,925,925	+		Rru_A1634	0.62	+2.1
1,925,925	+		Rru_A1634	0.62	+1.7
1,925,926	-		Rru_A1634	0.62	-0.1
1,925,926	-		Rru_A1634	0.62	-0.1
1,925,926	-		Rru_A1634	0.62	-0.1
1,925,986	-		Rru_A1634	0.66	-0.1
1,925,987	+		Rru_A1634	0.66	+2.1
1,925,987	+		Rru_A1634	0.66	+2.5
1,925,988	-		Rru_A1634	0.66	-0.1
1,925,988	-		Rru_A1634	0.66	-0.1
1,925,988	-		Rru_A1634	0.66	+2.5
1,925,988	-		Rru_A1634	0.66	-0.1
1,926,138	-		Rru_A1634	0.76	+1.4
1,926,182	+		Rru_A1634	0.79	+2.2
1,926,194	+		Rru_A1634	0.80	-0.1
1,926,194	+		Rru_A1634	0.80	-1.1
1,926,567	-				+1.0
1,926,670	+		Rru_A1635	0.12	-0.1
1,926,670	+		Rru_A1635	0.12	-0.1
1,926,671	-		Rru_A1635	0.12	-0.1
1,926,697	+		Rru_A1635	0.14	+0.9
1,926,697	+		Rru_A1635	0.14	-0.1
1,926,698	-		Rru_A1635	0.14	-0.1
1,926,698	-		Rru_A1635	0.14	-0.1
1,926,698	-		Rru_A1635	0.14	-0.1
1,926,698	-		Rru_A1635	0.14	-0.1
1,926,971	+		Rru_A1635	0.32	-0.1
1,926,971	+		Rru_A1635	0.32	+0.9
1,926,971	+		Rru_A1635	0.32	+1.9
1,926,972	-		Rru_A1635	0.32	+1.5
1,927,055	-		Rru_A1635	0.38	-0.1
1,927,222	+		Rru_A1635	0.49	-0.1
1,927,222	+		Rru_A1635	0.49	-0.1
1,927,223	-		Rru_A1635	0.49	+1.2
1,927,223	-		Rru_A1635	0.49	+1.7
1,927,223	-		Rru_A1635	0.49	+1.5
1,927,279	+		Rru_A1635	0.53	-0.1
1,927,279	+		Rru_A1635	0.53	+1.7
1,927,280	-		Rru_A1635	0.53	-0.1
1,927,280	-		Rru_A1635	0.53	-0.1
1,927,280	-		Rru_A1635	0.53	-0.1
1,927,286	-		Rru_A1635	0.53	-0.1
1,927,304	+		Rru_A1635	0.54	-0.1
1,927,304	+		Rru_A1635	0.54	-0.1
1,927,304	+		Rru_A1635	0.54	+2.0
1,927,304	+		Rru_A1635	0.54	-0.4
1,927,305	-		Rru_A1635	0.54	+2.2
1,927,305	-		Rru_A1635	0.54	-0.1
1,927,305	-		Rru_A1635	0.54	-0.1
1,927,305	-		Rru_A1635	0.54	+1.5
1,927,347	+		Rru_A1635	0.57	+0.7
1,927,442	-		Rru_A1635	0.63	+1.9
1,927,442	-		Rru_A1635	0.63	-0.1
1,927,465	+		Rru_A1635	0.65	-0.1
1,927,465	+		Rru_A1635	0.65	+1.8
1,927,465	+		Rru_A1635	0.65	+2.0
1,927,466	-		Rru_A1635	0.65	+1.4
1,927,466	-		Rru_A1635	0.65	+2.8
1,927,466	-		Rru_A1635	0.65	+1.8
1,927,466	-		Rru_A1635	0.65	+0.9