Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1625

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,916,794	+				+1.7
1,917,019	+				+1.8
1,917,020	-				+1.3
1,917,020	-				-0.1
1,917,020	-				+1.9
1,917,075	-				+1.2
1,917,075	-				+0.9
1,917,076	+				+1.3
1,917,077	-				+0.9
1,917,084	-				+1.0
1,917,091	+				+1.3
1,917,135	-				+2.0
1,917,307	-		Rru_A1624	0.38	+1.4
1,917,351	+		Rru_A1624	0.48	+2.6
1,917,351	+		Rru_A1624	0.48	+1.3
1,917,351	+		Rru_A1624	0.48	+1.8
1,917,351	+		Rru_A1624	0.48	-0.1
1,917,352	-		Rru_A1624	0.48	-0.1
1,917,352	-		Rru_A1624	0.48	-0.1
1,917,352	-		Rru_A1624	0.48	-0.1
1,917,502	+		Rru_A1624	0.82	-1.7
1,917,502	+		Rru_A1624	0.82	-0.1
1,917,503	-		Rru_A1624	0.82	-0.1
1,917,503	-		Rru_A1624	0.82	+1.3
1,917,577	+				-1.1
1,917,577	+				+0.7
1,917,577	+				-0.1
1,917,577	+				+2.5
1,917,577	+				+0.7
1,917,577	+				+3.3
1,917,577	+				+1.6
1,917,577	+				-0.1
1,917,577	+				-0.2
1,917,578	-				-0.1
1,917,718	+				+1.5
1,917,719	-				+1.1
1,917,750	-				-0.1
1,917,791	-				-0.1
1,917,792	+				+0.6
1,917,795	+				+1.2
1,917,795	+				+1.2
1,917,811	-				-0.7
1,917,831	-				+1.3
1,917,886	-		Rru_A1625	0.14	-0.1
1,917,939	+		Rru_A1625	0.21	-0.1
1,918,014	-		Rru_A1625	0.31	+1.4
1,918,039	+		Rru_A1625	0.34	+0.9
1,918,039	+		Rru_A1625	0.34	+0.9
1,918,040	-		Rru_A1625	0.34	-0.1
1,918,040	-		Rru_A1625	0.34	+1.2
1,918,043	+		Rru_A1625	0.35	+0.5
1,918,044	-		Rru_A1625	0.35	+1.8
1,918,075	+		Rru_A1625	0.39	-0.1
1,918,075	+		Rru_A1625	0.39	+1.0
1,918,132	+		Rru_A1625	0.46	+1.4
1,918,132	+		Rru_A1625	0.46	-0.1
1,918,133	-		Rru_A1625	0.46	+0.9
1,918,410	+		Rru_A1625	0.82	+2.1
1,918,410	+		Rru_A1625	0.82	+1.6
1,918,410	+		Rru_A1625	0.82	-0.1
1,918,410	+		Rru_A1625	0.82	+1.3
1,918,410	+		Rru_A1625	0.82	+0.9
1,918,411	-		Rru_A1625	0.82	-1.1
1,918,411	-		Rru_A1625	0.82	-0.1
1,918,411	-		Rru_A1625	0.82	-0.1
1,918,488	+				+1.2
1,918,544	-				+0.5
1,918,544	-				+1.8
1,918,596	+				+0.8
1,918,899	+		Rru_A1626	0.55	-1.1
1,918,900	-		Rru_A1626	0.55	+0.4
1,918,900	-		Rru_A1626	0.55	+0.5
1,919,041	+		Rru_A1626	0.78	-0.1
1,919,041	+		Rru_A1626	0.78	+0.3
1,919,222	+				+0.4
1,919,234	-				-0.1
1,919,377	+		Rru_A1627	0.28	-0.6
1,919,378	-		Rru_A1627	0.28	-0.1
1,919,378	-		Rru_A1627	0.28	-0.1
1,919,378	-		Rru_A1627	0.28	+0.7