Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1615

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,907,593	+		Rru_A1613	0.87	-0.1
1,907,594	-		Rru_A1613	0.87	+1.1
1,907,594	-		Rru_A1613	0.87	-0.1
1,907,594	-		Rru_A1613	0.87	+0.8
1,907,596	+		Rru_A1613	0.87	-1.1
1,907,596	+		Rru_A1613	0.87	-0.1
1,907,596	+		Rru_A1613	0.87	-0.1
1,907,597	-		Rru_A1613	0.87	-0.1
1,907,597	-		Rru_A1613	0.87	-0.1
1,907,597	-		Rru_A1613	0.87	+0.2
1,907,597	-		Rru_A1613	0.87	-1.9
1,907,735	+				-0.1
1,907,736	-				+0.6
1,907,736	-				-1.1
1,907,736	-				+0.4
1,907,736	-				+1.1
1,907,790	-				+0.2
1,907,790	-				-0.1
1,907,790	-				+1.5
1,907,790	-				+1.1
1,907,885	+				+0.2
1,908,178	-				-0.1
1,908,190	+				+1.0
1,908,191	-				+1.1
1,908,331	+		Rru_A1614	0.54	-0.1
1,908,331	+		Rru_A1614	0.54	+0.8
1,908,332	-		Rru_A1614	0.54	+0.7
1,908,332	-		Rru_A1614	0.54	+0.8
1,908,332	-		Rru_A1614	0.54	+1.3
1,908,332	-		Rru_A1614	0.54	+0.1
1,908,332	-		Rru_A1614	0.54	+1.9
1,908,333	+		Rru_A1614	0.55	-1.1
1,908,334	-		Rru_A1614	0.55	+0.6
1,908,334	-		Rru_A1614	0.55	+3.5
1,908,334	-		Rru_A1614	0.55	-0.1
1,908,467	-				+1.1
1,908,467	-				+0.2
1,908,521	-				-0.1
1,908,551	+				-0.1
1,908,551	+				+1.1
1,908,552	-				-0.1
1,908,734	+		Rru_A1615	0.28	+0.6
1,908,734	+		Rru_A1615	0.28	+0.9
1,908,734	+		Rru_A1615	0.28	-0.1
1,908,760	-		Rru_A1615	0.31	-0.1
1,908,760	-		Rru_A1615	0.31	-0.1
1,908,891	+		Rru_A1615	0.46	-1.1
1,908,891	+		Rru_A1615	0.46	+1.7
1,908,891	+		Rru_A1615	0.46	+1.0
1,909,071	-		Rru_A1615	0.67	+0.9
1,909,210	-		Rru_A1615	0.83	-0.1
1,909,224	-		Rru_A1615	0.85	+1.2
1,909,262	+		Rru_A1615	0.89	+1.1
1,909,262	+		Rru_A1615	0.89	+0.8
1,909,263	-		Rru_A1615	0.89	+0.2
1,909,263	-		Rru_A1615	0.89	-0.1
1,909,263	-		Rru_A1615	0.89	+1.1
1,909,263	-		Rru_A1615	0.89	+0.6
1,909,263	-		Rru_A1615	0.89	+0.4
1,909,263	-		Rru_A1615	0.89	+1.3
1,909,263	-		Rru_A1615	0.89	+1.1
1,909,377	+				+0.4
1,909,377	+				+0.7
1,909,377	+				+0.5
1,909,377	+				-0.1
1,909,377	+				+1.8
1,909,377	+				+1.6
1,909,378	-				-0.1
1,909,378	-				+1.4
1,909,378	-				+1.0
1,909,378	-				+2.0
1,909,378	-				+2.2
1,909,378	-				+2.1
1,909,541	-		Rru_A1616	0.13	+1.8
1,909,589	+		Rru_A1616	0.18	+1.2
1,909,590	-		Rru_A1616	0.18	+1.8
1,909,765	+		Rru_A1616	0.36	+1.3
1,909,765	+		Rru_A1616	0.36	-0.1
1,909,766	-		Rru_A1616	0.36	-0.1
1,909,766	-		Rru_A1616	0.36	+2.9
1,909,766	-		Rru_A1616	0.36	-0.1
1,909,766	-		Rru_A1616	0.36	-0.1
1,909,766	-		Rru_A1616	0.36	+1.5
1,909,766	-		Rru_A1616	0.36	-0.1
1,909,767	+		Rru_A1616	0.36	-0.1
1,909,768	-		Rru_A1616	0.36	+1.0
1,909,768	-		Rru_A1616	0.36	+1.9
1,909,954	+		Rru_A1616	0.55	+1.9
1,910,019	+		Rru_A1616	0.61	-0.1
1,910,020	-		Rru_A1616	0.61	+2.1
1,910,020	-		Rru_A1616	0.61	+2.3
1,910,020	-		Rru_A1616	0.61	-0.1
1,910,020	-		Rru_A1616	0.61	+3.6
1,910,020	-		Rru_A1616	0.61	+3.0
1,910,035	+		Rru_A1616	0.63	+0.8
1,910,036	-		Rru_A1616	0.63	-1.1
1,910,036	-		Rru_A1616	0.63	-0.3
1,910,038	-		Rru_A1616	0.63	+1.4
1,910,038	-		Rru_A1616	0.63	-0.1
1,910,038	-		Rru_A1616	0.63	+1.2
1,910,350	+				-0.1
1,910,350	+				-0.1
1,910,351	-				+0.8