Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1490

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,757,969	+		Rru_A1489	0.33	-0.1
1,757,969	+		Rru_A1489	0.33	+3.0
1,757,970	-		Rru_A1489	0.33	+0.7
1,758,017	+		Rru_A1489	0.36	-0.1
1,758,170	+		Rru_A1489	0.47	-0.1
1,758,171	-		Rru_A1489	0.47	+0.7
1,758,171	-		Rru_A1489	0.47	+1.5
1,758,171	-		Rru_A1489	0.47	+1.1
1,758,171	-		Rru_A1489	0.47	+1.9
1,758,172	+		Rru_A1489	0.47	-0.1
1,758,172	+		Rru_A1489	0.47	-1.1
1,758,173	-		Rru_A1489	0.48	-0.1
1,758,173	-		Rru_A1489	0.48	+0.2
1,758,173	-		Rru_A1489	0.48	+2.2
1,758,173	-		Rru_A1489	0.48	+2.1
1,758,272	+		Rru_A1489	0.55	+0.8
1,758,272	+		Rru_A1489	0.55	+1.4
1,758,273	-		Rru_A1489	0.55	-0.1
1,758,273	-		Rru_A1489	0.55	+1.7
1,758,273	-		Rru_A1489	0.55	-0.1
1,758,274	+		Rru_A1489	0.55	-0.1
1,758,274	+		Rru_A1489	0.55	+1.3
1,758,275	-		Rru_A1489	0.55	+2.5
1,758,275	-		Rru_A1489	0.55	-1.7
1,758,296	+		Rru_A1489	0.57	+1.6
1,758,297	-		Rru_A1489	0.57	+1.4
1,758,315	-		Rru_A1489	0.58	+1.5
1,758,315	-		Rru_A1489	0.58	+0.5
1,758,354	-		Rru_A1489	0.61	-0.1
1,758,364	+		Rru_A1489	0.62	+1.6
1,758,365	-		Rru_A1489	0.62	+0.9
1,758,367	+		Rru_A1489	0.62	-0.1
1,758,367	+		Rru_A1489	0.62	+0.9
1,758,368	-		Rru_A1489	0.62	+1.4
1,758,368	-		Rru_A1489	0.62	+2.4
1,758,368	-		Rru_A1489	0.62	+1.0
1,758,398	+		Rru_A1489	0.64	-0.1
1,758,399	-		Rru_A1489	0.64	+0.4
1,758,399	-		Rru_A1489	0.64	+1.7
1,758,400	+		Rru_A1489	0.64	+0.1
1,758,400	+		Rru_A1489	0.64	-0.1
1,758,401	-		Rru_A1489	0.64	+1.9
1,758,401	-		Rru_A1489	0.64	+1.8
1,758,428	-		Rru_A1489	0.66	+1.4
1,758,479	+		Rru_A1489	0.70	+2.7
1,758,480	-		Rru_A1489	0.70	-0.1
1,758,632	+		Rru_A1489	0.81	-0.1
1,758,633	-		Rru_A1489	0.81	+0.8
1,758,633	-		Rru_A1489	0.81	-0.1
1,758,670	+		Rru_A1489	0.84	+1.1
1,758,671	-		Rru_A1489	0.84	-0.3
1,758,683	+		Rru_A1489	0.85	-0.1
1,758,733	+		Rru_A1489	0.89	+2.9
1,758,733	+		Rru_A1489	0.89	+0.4
1,758,733	+		Rru_A1489	0.89	-0.1
1,758,734	-		Rru_A1489	0.89	+1.6
1,758,761	+				+1.1
1,758,761	+				-0.1
1,758,761	+				+1.8
1,758,761	+				+1.0
1,758,762	-				+1.9
1,758,762	-				-0.1
1,758,762	-				+0.4
1,758,762	-				-0.1
1,758,839	+				+1.2
1,758,839	+				+0.9
1,758,840	-				+1.2
1,758,840	-				-0.1
1,759,002	+				-0.1
1,759,002	+				+1.9
1,759,033	+				-0.1
1,759,101	+				+0.7
1,759,101	+				+1.9
1,759,101	+				+0.4
1,759,101	+				-0.7
1,759,101	+				-0.1
1,759,101	+				+1.6
1,759,102	-				+1.6
1,759,102	-				-0.1
1,759,102	-				-0.1
1,759,102	-				+1.1
1,759,269	+		Rru_A1490	0.18	+1.8
1,759,269	+		Rru_A1490	0.18	-0.1
1,759,277	+		Rru_A1490	0.18	-0.1
1,759,476	+		Rru_A1490	0.27	+3.2
1,759,476	+		Rru_A1490	0.27	-0.1
1,759,476	+		Rru_A1490	0.27	+0.8
1,759,477	-		Rru_A1490	0.27	-0.1
1,759,477	-		Rru_A1490	0.27	-0.1
1,759,492	+		Rru_A1490	0.28	+1.2
1,759,492	+		Rru_A1490	0.28	+0.3
1,759,492	+		Rru_A1490	0.28	-0.1
1,759,492	+		Rru_A1490	0.28	-0.1
1,759,492	+		Rru_A1490	0.28	-0.1
1,759,493	-		Rru_A1490	0.28	+1.0
1,759,612	+		Rru_A1490	0.33	-0.1
1,759,687	-		Rru_A1490	0.36	+1.5
1,759,687	-		Rru_A1490	0.36	-1.1
1,759,687	-		Rru_A1490	0.36	+3.1
1,759,873	+		Rru_A1490	0.45	+0.7
1,759,874	-		Rru_A1490	0.45	+2.7
1,759,874	-		Rru_A1490	0.45	-0.1
1,760,116	+		Rru_A1490	0.56	+0.5
1,760,116	+		Rru_A1490	0.56	+0.1
1,760,116	+		Rru_A1490	0.56	+0.7
1,760,221	+		Rru_A1490	0.61	+1.0
1,760,566	+		Rru_A1490	0.76	+0.6
1,760,566	+		Rru_A1490	0.76	+1.5
1,760,567	-		Rru_A1490	0.76	+1.5
1,760,567	-		Rru_A1490	0.76	-0.1
1,760,798	+		Rru_A1490	0.87	-0.1
1,760,798	+		Rru_A1490	0.87	+1.4
1,760,799	-		Rru_A1490	0.87	-0.1
1,760,799	-		Rru_A1490	0.87	+2.0
1,760,902	+				+1.2
1,760,902	+				+1.3
1,760,902	+				-0.1
1,760,902	+				-1.1
1,760,902	+				+1.4
1,760,902	+				+1.5
1,760,903	-				+0.9
1,760,903	-				+2.1
1,760,903	-				-0.1
1,760,903	-				-0.1
1,761,028	+				+1.4
1,761,028	+				-0.1
1,761,035	-				-0.1
1,761,035	-				+0.3
1,761,043	+				-0.1
1,761,044	-				+0.4
1,761,055	+				+2.0
1,761,055	+				-0.1
1,761,056	-				+1.4
1,761,073	+				+1.3
1,761,073	+				+2.0
1,761,073	+				+1.3
1,761,073	+				+2.2
1,761,073	+				+1.9
1,761,073	+				+2.4
1,761,074	-				+0.6
1,761,074	-				+1.6
1,761,074	-				-0.1
1,761,074	-				+1.8
1,761,074	-				-0.1
1,761,074	-				+1.4
1,761,074	-				-0.3
1,761,074	-				+1.2
1,761,074	-				-0.2
1,761,074	-				-0.1
1,761,074	-				-0.1
1,761,076	+				-0.1
1,761,076	+				+0.8
1,761,076	+				+1.9
1,761,076	+				+0.3
1,761,076	+				+2.6
1,761,076	+				-0.1
1,761,076	+				-0.7
1,761,077	-				-0.1
1,761,077	-				-0.1
1,761,077	-				+2.7
1,761,077	-				-0.1
1,761,077	-				-0.0
1,761,342	-		Rru_A1491	0.37	+1.7
1,761,962	+		Rru_A1492	0.14	+1.9
1,761,963	-		Rru_A1492	0.14	+1.7
1,762,086	+		Rru_A1492	0.23	+1.6