Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1403

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,655,246	+				+1.0
1,655,246	+				+2.7
1,655,246	+				+1.5
1,655,246	+				-0.1
1,655,246	+				+0.8
1,655,247	-				+1.7
1,655,247	-				-0.1
1,655,247	-				+1.0
1,655,247	-				+2.3
1,655,641	+		Rru_A1402	0.71	+2.5
1,655,641	+		Rru_A1402	0.71	-0.1
1,655,641	+		Rru_A1402	0.71	+1.2
1,655,758	-				+0.2
1,655,797	+				+1.1
1,655,992	+				+1.3
1,655,992	+				+0.9
1,655,992	+				+0.6
1,655,992	+				-0.1
1,655,993	-				-0.1
1,655,994	+				+1.2
1,655,995	-				-0.1
1,656,064	+		Rru_A1403	0.13	+1.4
1,656,065	-		Rru_A1403	0.13	+1.4
1,656,065	-		Rru_A1403	0.13	+1.7
1,656,184	+		Rru_A1403	0.19	+0.6
1,656,184	+		Rru_A1403	0.19	+1.7
1,656,291	+		Rru_A1403	0.24	+0.9
1,656,294	+		Rru_A1403	0.25	+2.4
1,656,294	+		Rru_A1403	0.25	+1.2
1,656,447	+		Rru_A1403	0.33	+2.3
1,656,498	+		Rru_A1403	0.35	+0.7
1,656,553	-		Rru_A1403	0.38	+0.9
1,656,553	-		Rru_A1403	0.38	+1.3
1,656,612	+		Rru_A1403	0.41	+1.7
1,656,783	+		Rru_A1403	0.50	+1.0
1,656,784	-		Rru_A1403	0.50	-0.1
1,657,107	+		Rru_A1403	0.67	+1.1
1,657,107	+		Rru_A1403	0.67	+1.9
1,657,107	+		Rru_A1403	0.67	+1.5
1,657,531	+		Rru_A1403	0.89	+1.3
1,657,733	-				+1.3
1,657,733	-				+1.4
1,657,807	+				+3.5
1,657,813	+				-0.1
1,657,814	-				-0.1
1,657,897	-				-0.1
1,658,044	+		Rru_A1404	0.13	-0.1
1,658,054	+		Rru_A1404	0.13	-2.1
1,658,055	-		Rru_A1404	0.13	-0.4
1,658,174	+		Rru_A1404	0.20	-0.1
1,658,174	+		Rru_A1404	0.20	+1.3
1,658,354	+		Rru_A1404	0.29	-1.1
1,658,355	-		Rru_A1404	0.29	+0.4
1,658,355	-		Rru_A1404	0.29	+1.3
1,658,542	+		Rru_A1404	0.40	-0.3
1,658,542	+		Rru_A1404	0.40	-0.1
1,658,543	-		Rru_A1404	0.40	-0.1
1,658,543	-		Rru_A1404	0.40	-0.8
1,658,657	-		Rru_A1404	0.46	+0.8
1,658,657	-		Rru_A1404	0.46	+0.9
1,658,719	+		Rru_A1404	0.49	+0.7