Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1357

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1356 and Rru_A1357 are separated by 302 nucleotidesRru_A1357 and Rru_A1358 are separated by 165 nucleotides Rru_A1356: Rru_A1356 - Catalase (NCBI), at 1,596,203 to 1,598,317 _A1356 Rru_A1357: Rru_A1357 - Transaldolase AB (NCBI), at 1,598,620 to 1,599,603 _A1357 Rru_A1358: Rru_A1358 - Triosephosphate isomerase (NCBI), at 1,599,769 to 1,600,545 _A1358 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1597.683 kb on - strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.690 kb on + strand, within Rru_A1356at 1597.691 kb on - strand, within Rru_A1356at 1597.691 kb on - strand, within Rru_A1356at 1597.691 kb on - strand, within Rru_A1356at 1597.691 kb on - strand, within Rru_A1356at 1597.691 kb on - strand, within Rru_A1356at 1597.861 kb on + strand, within Rru_A1356at 1597.861 kb on + strand, within Rru_A1356at 1597.875 kb on + strand, within Rru_A1356at 1597.876 kb on - strand, within Rru_A1356at 1597.991 kb on - strand, within Rru_A1356at 1598.012 kb on + strand, within Rru_A1356at 1598.012 kb on + strand, within Rru_A1356at 1598.022 kb on + strand, within Rru_A1356at 1598.022 kb on + strand, within Rru_A1356at 1598.022 kb on + strand, within Rru_A1356at 1598.023 kb on - strand, within Rru_A1356at 1598.023 kb on - strand, within Rru_A1356at 1598.322 kb on + strandat 1598.323 kb on - strandat 1598.323 kb on - strandat 1598.479 kb on + strandat 1598.497 kb on + strandat 1598.500 kb on - strandat 1598.603 kb on + strandat 1598.604 kb on - strandat 1598.604 kb on - strandat 1598.604 kb on - strandat 1598.604 kb on - strandat 1598.604 kb on - strandat 1598.969 kb on + strand, within Rru_A1357at 1598.969 kb on + strand, within Rru_A1357at 1598.969 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.975 kb on + strand, within Rru_A1357at 1598.976 kb on - strand, within Rru_A1357at 1598.976 kb on - strand, within Rru_A1357at 1599.080 kb on - strand, within Rru_A1357at 1599.459 kb on - strand, within Rru_A1357at 1599.459 kb on - strand, within Rru_A1357at 1599.771 kb on - strandat 1600.049 kb on + strand, within Rru_A1358at 1600.478 kb on + strandat 1600.479 kb on - strandat 1600.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,597,683 - Rru_A1356 0.70 +1.9
1,597,690 + Rru_A1356 0.70 +0.6
1,597,690 + Rru_A1356 0.70 +0.1
1,597,690 + Rru_A1356 0.70 +0.5
1,597,690 + Rru_A1356 0.70 +1.2
1,597,690 + Rru_A1356 0.70 +0.5
1,597,690 + Rru_A1356 0.70 -0.1
1,597,691 - Rru_A1356 0.70 +2.4
1,597,691 - Rru_A1356 0.70 +2.3
1,597,691 - Rru_A1356 0.70 -0.1
1,597,691 - Rru_A1356 0.70 -1.1
1,597,691 - Rru_A1356 0.70 +0.7
1,597,861 + Rru_A1356 0.78 +0.9
1,597,861 + Rru_A1356 0.78 +0.7
1,597,875 + Rru_A1356 0.79 -0.1
1,597,876 - Rru_A1356 0.79 -0.1
1,597,991 - Rru_A1356 0.85 +1.5
1,598,012 + Rru_A1356 0.86 +0.7
1,598,012 + Rru_A1356 0.86 -1.6
1,598,022 + Rru_A1356 0.86 -0.1
1,598,022 + Rru_A1356 0.86 -0.1
1,598,022 + Rru_A1356 0.86 -0.1
1,598,023 - Rru_A1356 0.86 +0.4
1,598,023 - Rru_A1356 0.86 +0.4
1,598,322 + +2.5
1,598,323 - +0.6
1,598,323 - -0.1
1,598,479 + +1.0
1,598,497 + +0.5
1,598,500 - +3.3
1,598,603 + -0.1
1,598,604 - +1.5
1,598,604 - -0.1
1,598,604 - +0.4
1,598,604 - +0.2
1,598,604 - +0.5
1,598,969 + Rru_A1357 0.35 -0.1
1,598,969 + Rru_A1357 0.35 -0.1
1,598,969 + Rru_A1357 0.35 -0.1
1,598,975 + Rru_A1357 0.36 -1.1
1,598,975 + Rru_A1357 0.36 -1.6
1,598,975 + Rru_A1357 0.36 -0.1
1,598,975 + Rru_A1357 0.36 +0.7
1,598,975 + Rru_A1357 0.36 -1.1
1,598,975 + Rru_A1357 0.36 -0.1
1,598,976 - Rru_A1357 0.36 -0.6
1,598,976 - Rru_A1357 0.36 -0.1
1,599,080 - Rru_A1357 0.47 -0.1
1,599,459 - Rru_A1357 0.85 -0.1
1,599,459 - Rru_A1357 0.85 -1.1
1,599,771 - -0.1
1,600,049 + Rru_A1358 0.36 -0.1
1,600,478 + -0.1
1,600,479 - -2.7
1,600,563 + +2.0

Or see this region's nucleotide sequence