Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1340

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,576,957	+		Rru_A1339	0.62	-0.1
1,576,958	-		Rru_A1339	0.63	-0.1
1,577,209	+		Rru_A1339	0.86	-0.1
1,577,209	+		Rru_A1339	0.86	-0.1
1,577,209	+		Rru_A1339	0.86	-0.1
1,577,209	+		Rru_A1339	0.86	-1.1
1,577,209	+		Rru_A1339	0.86	-0.1
1,577,729	+				+0.9
1,577,730	-				-0.1
1,577,730	-				+2.3
1,577,730	-				+1.5
1,577,905	-				+1.0
1,577,905	-				+0.1
1,577,943	+				+0.8
1,577,943	+				-0.1
1,578,228	-		Rru_A1340	0.32	+0.5
1,578,241	+		Rru_A1340	0.33	+1.7
1,578,241	+		Rru_A1340	0.33	+2.1
1,578,241	+		Rru_A1340	0.33	+0.9
1,578,242	-		Rru_A1340	0.33	-1.1
1,578,242	-		Rru_A1340	0.33	+0.9
1,578,242	-		Rru_A1340	0.33	+1.5
1,578,242	-		Rru_A1340	0.33	-0.1
1,578,242	-		Rru_A1340	0.33	+1.2
1,578,497	-		Rru_A1340	0.59	+2.8
1,578,719	+		Rru_A1340	0.81	+2.1
1,578,719	+		Rru_A1340	0.81	-0.1
1,578,719	+		Rru_A1340	0.81	-1.1
1,578,719	+		Rru_A1340	0.81	+0.8
1,578,719	+		Rru_A1340	0.81	+1.8
1,578,719	+		Rru_A1340	0.81	-0.1
1,578,719	+		Rru_A1340	0.81	+1.4
1,578,719	+		Rru_A1340	0.81	+1.3
1,578,719	+		Rru_A1340	0.81	-1.1
1,578,719	+		Rru_A1340	0.81	+1.2
1,578,719	+		Rru_A1340	0.81	+1.3
1,578,719	+		Rru_A1340	0.81	+2.5
1,578,720	-		Rru_A1340	0.81	+0.8
1,578,720	-		Rru_A1340	0.81	+0.7
1,578,720	-		Rru_A1340	0.81	+0.8
1,578,720	-		Rru_A1340	0.81	+0.8
1,578,720	-		Rru_A1340	0.81	-0.3
1,578,720	-		Rru_A1340	0.81	-0.1
1,578,720	-		Rru_A1340	0.81	-0.1
1,578,720	-		Rru_A1340	0.81	-1.1
1,578,720	-		Rru_A1340	0.81	-0.1
1,578,720	-		Rru_A1340	0.81	+1.6
1,578,720	-		Rru_A1340	0.81	+1.0
1,578,720	-		Rru_A1340	0.81	+1.0
1,578,720	-		Rru_A1340	0.81	-0.1
1,578,720	-		Rru_A1340	0.81	-0.1
1,578,720	-		Rru_A1340	0.81	+1.5
1,578,721	+		Rru_A1340	0.81	+1.4
1,578,722	-		Rru_A1340	0.81	+1.0
1,578,722	-		Rru_A1340	0.81	-0.1
1,578,722	-		Rru_A1340	0.81	+1.1
1,578,722	-		Rru_A1340	0.81	+0.7
1,578,722	-		Rru_A1340	0.81	-1.1
1,578,722	-		Rru_A1340	0.81	+1.2
1,578,722	-		Rru_A1340	0.81	+1.4
1,578,729	-		Rru_A1340	0.82	-0.1
1,578,794	+		Rru_A1340	0.88	+1.0
1,578,895	+				+1.2
1,578,895	+				+0.8
1,578,896	-				+0.1
1,578,896	-				+2.0
1,578,918	+				+1.4
1,579,035	+		Rru_A1341	0.19	+3.2
1,579,036	-		Rru_A1341	0.20	+0.1
1,579,036	-		Rru_A1341	0.20	+0.5
1,579,036	-		Rru_A1341	0.20	-0.1
1,579,036	-		Rru_A1341	0.20	+1.3
1,579,036	-		Rru_A1341	0.20	+1.9
1,579,036	-		Rru_A1341	0.20	-0.1
1,579,036	-		Rru_A1341	0.20	+1.5
1,579,159	+		Rru_A1341	0.39	+1.4
1,579,159	+		Rru_A1341	0.39	+1.1
1,579,160	-		Rru_A1341	0.39	+1.4
1,579,160	-		Rru_A1341	0.39	-0.1
1,579,225	+		Rru_A1341	0.49	+1.6
1,579,226	-		Rru_A1341	0.49	+1.7
1,579,226	-		Rru_A1341	0.49	+1.2
1,579,226	-		Rru_A1341	0.49	+1.0
1,579,226	-		Rru_A1341	0.49	+1.1
1,579,226	-		Rru_A1341	0.49	+1.1
1,579,720	-				+1.9
1,579,769	+				+1.7