Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1320

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1319 and Rru_A1320 are separated by 191 nucleotidesRru_A1320 and Rru_A1321 are separated by 101 nucleotidesRru_A1321 and Rru_A1322 are separated by 32 nucleotides Rru_A1319: Rru_A1319 - Triphosphoribosyl-dephospho-CoA synthase (NCBI), at 1,557,388 to 1,558,311 _A1319 Rru_A1320: Rru_A1320 - Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI), at 1,558,503 to 1,559,714 _A1320 Rru_A1321: Rru_A1321 - Biotin--acetyl-CoA-carboxylase ligase (NCBI), at 1,559,816 to 1,560,649 _A1321 Rru_A1322: Rru_A1322 - alpha subunit of malonate decarboxylase (NCBI), at 1,560,682 to 1,562,355 _A1322 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1557.689 kb on - strand, within Rru_A1319at 1557.727 kb on - strand, within Rru_A1319at 1557.927 kb on + strand, within Rru_A1319at 1558.225 kb on - strandat 1558.225 kb on - strandat 1558.382 kb on + strandat 1558.393 kb on + strandat 1558.394 kb on - strandat 1558.397 kb on + strandat 1558.397 kb on + strandat 1558.614 kb on + strandat 1558.615 kb on - strandat 1558.615 kb on - strandat 1558.625 kb on + strand, within Rru_A1320at 1558.625 kb on + strand, within Rru_A1320at 1558.626 kb on - strand, within Rru_A1320at 1558.626 kb on - strand, within Rru_A1320at 1558.769 kb on + strand, within Rru_A1320at 1558.769 kb on + strand, within Rru_A1320at 1558.770 kb on - strand, within Rru_A1320at 1558.800 kb on + strand, within Rru_A1320at 1558.801 kb on - strand, within Rru_A1320at 1558.801 kb on - strand, within Rru_A1320at 1558.956 kb on + strand, within Rru_A1320at 1558.957 kb on - strand, within Rru_A1320at 1558.959 kb on + strand, within Rru_A1320at 1558.959 kb on + strand, within Rru_A1320at 1558.959 kb on + strand, within Rru_A1320at 1558.959 kb on + strand, within Rru_A1320at 1558.959 kb on + strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1558.960 kb on - strand, within Rru_A1320at 1559.085 kb on + strand, within Rru_A1320at 1559.085 kb on + strand, within Rru_A1320at 1559.086 kb on - strand, within Rru_A1320at 1559.086 kb on - strand, within Rru_A1320at 1559.086 kb on - strand, within Rru_A1320at 1559.091 kb on + strand, within Rru_A1320at 1559.091 kb on + strand, within Rru_A1320at 1559.106 kb on + strand, within Rru_A1320at 1559.107 kb on - strand, within Rru_A1320at 1559.121 kb on + strand, within Rru_A1320at 1559.151 kb on + strand, within Rru_A1320at 1559.151 kb on + strand, within Rru_A1320at 1559.151 kb on + strand, within Rru_A1320at 1559.349 kb on + strand, within Rru_A1320at 1559.350 kb on - strand, within Rru_A1320at 1559.608 kb on - strandat 1559.720 kb on - strandat 1559.720 kb on - strandat 1559.804 kb on - strandat 1560.195 kb on + strand, within Rru_A1321at 1560.296 kb on - strand, within Rru_A1321at 1560.696 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
1,557,689 - Rru_A1319 0.33 -0.1
1,557,727 - Rru_A1319 0.37 -0.1
1,557,927 + Rru_A1319 0.58 -0.4
1,558,225 - +1.3
1,558,225 - -0.1
1,558,382 + +1.4
1,558,393 + -1.1
1,558,394 - +0.8
1,558,397 + -0.1
1,558,397 + -0.1
1,558,614 + +1.1
1,558,615 - -0.1
1,558,615 - +2.9
1,558,625 + Rru_A1320 0.10 +1.8
1,558,625 + Rru_A1320 0.10 +0.9
1,558,626 - Rru_A1320 0.10 +2.1
1,558,626 - Rru_A1320 0.10 +0.6
1,558,769 + Rru_A1320 0.22 -0.1
1,558,769 + Rru_A1320 0.22 +0.7
1,558,770 - Rru_A1320 0.22 -2.9
1,558,800 + Rru_A1320 0.25 -0.1
1,558,801 - Rru_A1320 0.25 +0.4
1,558,801 - Rru_A1320 0.25 -0.1
1,558,956 + Rru_A1320 0.37 +1.3
1,558,957 - Rru_A1320 0.37 +0.8
1,558,959 + Rru_A1320 0.38 -0.1
1,558,959 + Rru_A1320 0.38 -0.1
1,558,959 + Rru_A1320 0.38 -0.6
1,558,959 + Rru_A1320 0.38 -0.1
1,558,959 + Rru_A1320 0.38 -0.1
1,558,960 - Rru_A1320 0.38 -0.1
1,558,960 - Rru_A1320 0.38 +0.4
1,558,960 - Rru_A1320 0.38 +1.9
1,558,960 - Rru_A1320 0.38 +1.2
1,558,960 - Rru_A1320 0.38 +2.5
1,558,960 - Rru_A1320 0.38 -0.1
1,559,085 + Rru_A1320 0.48 +1.0
1,559,085 + Rru_A1320 0.48 -0.1
1,559,086 - Rru_A1320 0.48 -0.1
1,559,086 - Rru_A1320 0.48 +1.8
1,559,086 - Rru_A1320 0.48 -0.1
1,559,091 + Rru_A1320 0.49 +1.3
1,559,091 + Rru_A1320 0.49 +1.5
1,559,106 + Rru_A1320 0.50 +0.9
1,559,107 - Rru_A1320 0.50 +0.5
1,559,121 + Rru_A1320 0.51 +1.2
1,559,151 + Rru_A1320 0.53 -0.1
1,559,151 + Rru_A1320 0.53 -0.1
1,559,151 + Rru_A1320 0.53 +1.2
1,559,349 + Rru_A1320 0.70 +2.1
1,559,350 - Rru_A1320 0.70 +1.6
1,559,608 - -0.1
1,559,720 - +1.3
1,559,720 - +0.4
1,559,804 - -0.1
1,560,195 + Rru_A1321 0.45 -0.7
1,560,296 - Rru_A1321 0.58 +1.2
1,560,696 + +0.9

Or see this region's nucleotide sequence