Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1308

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,541,502	+		Rru_A1306	0.87	+2.7
1,541,503	-		Rru_A1306	0.87	+0.4
1,541,611	-				-0.0
1,541,708	-		Rru_A1307	0.20	+1.3
1,542,029	+		Rru_A1307	0.82	-1.0
1,542,029	+		Rru_A1307	0.82	-0.0
1,542,030	-		Rru_A1307	0.82	+0.9
1,542,030	-		Rru_A1307	0.82	+1.9
1,542,030	-		Rru_A1307	0.82	+1.0
1,542,030	-		Rru_A1307	0.82	-0.0
1,542,213	+				-0.0
1,542,396	+				-0.0
1,542,422	-		Rru_A1308	0.11	-0.0
1,542,435	-		Rru_A1308	0.12	+0.4
1,542,455	-		Rru_A1308	0.13	+2.3
1,542,601	+		Rru_A1308	0.21	-0.0
1,542,601	+		Rru_A1308	0.21	-0.0
1,542,601	+		Rru_A1308	0.21	+1.0
1,542,601	+		Rru_A1308	0.21	-0.0
1,542,703	+		Rru_A1308	0.27	-0.0
1,542,704	-		Rru_A1308	0.27	-0.0
1,542,704	-		Rru_A1308	0.27	+0.7
1,542,733	+		Rru_A1308	0.28	+1.0
1,542,733	+		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,734	-		Rru_A1308	0.28	-0.0
1,542,760	+		Rru_A1308	0.30	-0.0
1,542,760	+		Rru_A1308	0.30	-0.0
1,542,761	-		Rru_A1308	0.30	-0.0
1,542,761	-		Rru_A1308	0.30	-0.0
1,543,072	+		Rru_A1308	0.47	-1.0
1,543,091	-		Rru_A1308	0.48	-0.0
1,543,175	+		Rru_A1308	0.53	-0.0
1,543,397	+		Rru_A1308	0.65	-0.9
1,543,397	+		Rru_A1308	0.65	-0.0
1,543,397	+		Rru_A1308	0.65	-0.0
1,543,398	-		Rru_A1308	0.65	-1.0
1,543,454	+		Rru_A1308	0.68	-0.0
1,543,454	+		Rru_A1308	0.68	+0.3
1,543,454	+		Rru_A1308	0.68	-0.0
1,543,454	+		Rru_A1308	0.68	-0.0
1,543,455	-		Rru_A1308	0.69	-0.0
1,543,455	-		Rru_A1308	0.69	-0.4
1,543,455	-		Rru_A1308	0.69	-0.5
1,543,456	+		Rru_A1308	0.69	-0.0
1,543,457	-		Rru_A1308	0.69	-1.0
1,543,618	+		Rru_A1308	0.78	+0.5
1,543,618	+		Rru_A1308	0.78	-1.0
1,543,619	-		Rru_A1308	0.78	-2.0
1,543,619	-		Rru_A1308	0.78	-1.9
1,543,619	-		Rru_A1308	0.78	-0.0
1,543,619	-		Rru_A1308	0.78	-0.0
1,543,619	-		Rru_A1308	0.78	-0.5
1,543,643	-		Rru_A1308	0.79	-0.5
1,543,774	+		Rru_A1308	0.86	+0.5
1,543,775	-		Rru_A1308	0.86	-1.0
1,543,981	+				-0.0
1,543,981	+				-0.0
1,543,982	-				-0.0
1,544,052	+				-0.0
1,544,052	+				+0.8
1,544,052	+				-1.9
1,544,053	-				-0.0
1,544,053	-				-0.0
1,544,343	+		Rru_A1309	0.13	+1.8
1,544,344	-		Rru_A1309	0.13	-1.0
1,544,616	+		Rru_A1309	0.24	-0.0
1,544,616	+		Rru_A1309	0.24	-0.0
1,544,617	-		Rru_A1309	0.24	-0.0
1,544,617	-		Rru_A1309	0.24	-0.8
1,544,734	-		Rru_A1309	0.29	-0.0
1,544,845	+		Rru_A1309	0.34	-0.0
1,544,847	+		Rru_A1309	0.34	-0.0
1,544,848	-		Rru_A1309	0.34	-0.0
1,544,848	-		Rru_A1309	0.34	-0.0
1,544,848	-		Rru_A1309	0.34	-0.0
1,544,848	-		Rru_A1309	0.34	-0.0
1,544,848	-		Rru_A1309	0.34	-0.0