Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1264 and Rru_A1265 are separated by 193 nucleotides Rru_A1265 and Rru_A1266 are separated by 51 nucleotides Rru_A1266 and Rru_A1267 are separated by 58 nucleotides
Rru_A1264: Rru_A1264 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,485,291 to 1,486,073
_A1264
Rru_A1265: Rru_A1265 - Transcriptional Regulator, DeoR family (NCBI), at 1,486,267 to 1,487,124
_A1265
Rru_A1266: Rru_A1266 - Photosystem I assembly BtpA (NCBI), at 1,487,176 to 1,487,979
_A1266
Rru_A1267: Rru_A1267 - Carbohydrate kinase, FGGY (NCBI), at 1,488,038 to 1,489,543
_A1267
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1485.292 kb on + strand at 1485.293 kb on - strand at 1485.427 kb on + strand, within Rru_A1264 at 1485.427 kb on + strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.428 kb on - strand, within Rru_A1264 at 1485.607 kb on + strand, within Rru_A1264 at 1485.985 kb on + strand, within Rru_A1264 at 1485.986 kb on - strand, within Rru_A1264 at 1486.606 kb on + strand, within Rru_A1265 at 1486.748 kb on - strand, within Rru_A1265 at 1486.882 kb on + strand, within Rru_A1265 at 1487.004 kb on + strand, within Rru_A1265
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,485,292 + -0.0 1,485,293 - +0.7 1,485,427 + Rru_A1264 0.17 -0.0 1,485,427 + Rru_A1264 0.17 +1.9 1,485,428 - Rru_A1264 0.17 +0.1 1,485,428 - Rru_A1264 0.17 +0.4 1,485,428 - Rru_A1264 0.17 -0.0 1,485,428 - Rru_A1264 0.17 +0.7 1,485,607 + Rru_A1264 0.40 -0.0 1,485,985 + Rru_A1264 0.89 +0.5 1,485,986 - Rru_A1264 0.89 +1.0 1,486,606 + Rru_A1265 0.40 +0.3 1,486,748 - Rru_A1265 0.56 +2.8 1,486,882 + Rru_A1265 0.72 -0.0 1,487,004 + Rru_A1265 0.86 -1.6
Or see this region's nucleotide sequence