Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1263

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,483,404	+		Rru_A1262	0.27	-0.0
1,483,507	-		Rru_A1262	0.35	+1.1
1,483,530	+		Rru_A1262	0.37	+1.3
1,483,530	+		Rru_A1262	0.37	+0.8
1,483,530	+		Rru_A1262	0.37	-0.0
1,483,531	-		Rru_A1262	0.37	+0.8
1,483,533	-		Rru_A1262	0.37	+1.0
1,483,541	+		Rru_A1262	0.38	+2.0
1,483,541	+		Rru_A1262	0.38	+0.9
1,483,541	+		Rru_A1262	0.38	-0.0
1,483,541	+		Rru_A1262	0.38	+1.0
1,483,541	+		Rru_A1262	0.38	+1.5
1,483,541	+		Rru_A1262	0.38	+1.8
1,483,542	-		Rru_A1262	0.38	-1.0
1,483,542	-		Rru_A1262	0.38	+1.5
1,483,542	-		Rru_A1262	0.38	-0.0
1,483,548	-		Rru_A1262	0.38	+0.5
1,483,548	-		Rru_A1262	0.38	+1.3
1,483,616	+		Rru_A1262	0.44	+0.5
1,483,616	+		Rru_A1262	0.44	+1.1
1,483,617	-		Rru_A1262	0.44	+2.3
1,483,617	-		Rru_A1262	0.44	+1.1
1,483,617	-		Rru_A1262	0.44	-0.0
1,483,617	-		Rru_A1262	0.44	+1.5
1,483,637	+		Rru_A1262	0.45	-0.8
1,483,638	-		Rru_A1262	0.45	+0.8
1,483,638	-		Rru_A1262	0.45	+1.3
1,483,638	-		Rru_A1262	0.45	+1.6
1,483,724	+		Rru_A1262	0.52	-0.0
1,483,724	+		Rru_A1262	0.52	+1.1
1,483,871	+		Rru_A1262	0.64	-0.0
1,483,872	-		Rru_A1262	0.64	-0.0
1,483,913	+		Rru_A1262	0.67	+0.5
1,483,913	+		Rru_A1262	0.67	+1.1
1,483,932	-		Rru_A1262	0.68	-0.0
1,483,932	-		Rru_A1262	0.68	+0.3
1,483,932	-		Rru_A1262	0.68	+1.3
1,483,935	+		Rru_A1262	0.69	+1.3
1,483,936	-		Rru_A1262	0.69	-0.0
1,483,936	-		Rru_A1262	0.69	+0.7
1,483,937	+		Rru_A1262	0.69	-0.0
1,483,937	+		Rru_A1262	0.69	+1.5
1,483,937	+		Rru_A1262	0.69	+1.5
1,483,938	-		Rru_A1262	0.69	-1.4
1,483,950	+		Rru_A1262	0.70	+0.1
1,483,950	+		Rru_A1262	0.70	+2.3
1,483,950	+		Rru_A1262	0.70	-0.0
1,483,950	+		Rru_A1262	0.70	-0.5
1,483,950	+		Rru_A1262	0.70	+0.6
1,483,952	+		Rru_A1262	0.70	+1.9
1,483,952	+		Rru_A1262	0.70	-0.0
1,483,952	+		Rru_A1262	0.70	-0.3
1,483,953	-		Rru_A1262	0.70	+1.4
1,483,953	-		Rru_A1262	0.70	-0.0
1,483,953	-		Rru_A1262	0.70	+0.2
1,483,953	-		Rru_A1262	0.70	+0.9
1,483,953	-		Rru_A1262	0.70	-0.0
1,483,953	-		Rru_A1262	0.70	+0.5
1,484,000	+		Rru_A1262	0.74	-0.0
1,484,000	+		Rru_A1262	0.74	+0.7
1,484,000	+		Rru_A1262	0.74	+1.1
1,484,000	+		Rru_A1262	0.74	-0.0
1,484,000	+		Rru_A1262	0.74	+1.1
1,484,001	-		Rru_A1262	0.74	+0.6
1,484,084	+		Rru_A1262	0.80	+1.9
1,484,108	+		Rru_A1262	0.82	+1.8
1,484,232	-				+2.1
1,484,318	+				+0.8
1,484,318	+				+0.9
1,484,319	-				-1.0
1,484,319	-				+0.3
1,484,378	+				+1.4
1,484,379	-				+0.8
1,484,415	-				+0.6
1,484,425	+				-0.0
1,484,458	+		Rru_A1263	0.10	+2.0
1,484,461	+		Rru_A1263	0.10	+2.0
1,484,461	+		Rru_A1263	0.10	+1.4
1,484,547	-		Rru_A1263	0.21	-0.0
1,484,547	-		Rru_A1263	0.21	+0.7
1,484,922	-		Rru_A1263	0.67	+1.0
1,484,950	+		Rru_A1263	0.71	+0.5
1,485,008	+		Rru_A1263	0.78	+0.5
1,485,009	-		Rru_A1263	0.78	-0.3
1,485,029	+		Rru_A1263	0.80	-0.0
1,485,030	-		Rru_A1263	0.81	+3.1
1,485,030	-		Rru_A1263	0.81	+0.5
1,485,030	-		Rru_A1263	0.81	-0.2
1,485,292	+				-0.0
1,485,293	-				+0.7
1,485,427	+		Rru_A1264	0.17	-0.0
1,485,427	+		Rru_A1264	0.17	+1.9
1,485,428	-		Rru_A1264	0.17	+0.1
1,485,428	-		Rru_A1264	0.17	+0.4
1,485,428	-		Rru_A1264	0.17	-0.0
1,485,428	-		Rru_A1264	0.17	+0.7
1,485,607	+		Rru_A1264	0.40	-0.0
1,485,985	+		Rru_A1264	0.89	+0.5
1,485,986	-		Rru_A1264	0.89	+1.0