Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1192 and Rru_A1193 are separated by 76 nucleotides Rru_A1193 and Rru_A1194 are separated by 1 nucleotides Rru_A1194 and Rru_A1195 are separated by 734 nucleotides
Rru_A1192: Rru_A1192 - Ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 1,409,640 to 1,410,206
_A1192
Rru_A1193: Rru_A1193 - Dinitrogenase iron-molybdenum cofactor biosynthesis (NCBI), at 1,410,283 to 1,410,705
_A1193
Rru_A1194: Rru_A1194 - Protein of unknown function DUF134 (NCBI), at 1,410,707 to 1,411,138
_A1194
Rru_A1195: Rru_A1195 - Cell wall hydrolase, SleB (NCBI), at 1,411,873 to 1,412,535
_A1195
Position (kb)
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1409.737 kb on + strand, within Rru_A1192 at 1409.737 kb on + strand, within Rru_A1192 at 1409.738 kb on - strand, within Rru_A1192 at 1409.928 kb on + strand, within Rru_A1192 at 1409.929 kb on - strand, within Rru_A1192 at 1409.929 kb on - strand, within Rru_A1192 at 1410.124 kb on + strand, within Rru_A1192 at 1410.129 kb on + strand, within Rru_A1192 at 1410.130 kb on - strand, within Rru_A1192 at 1410.708 kb on + strand at 1410.708 kb on + strand at 1410.708 kb on + strand at 1410.708 kb on + strand at 1410.708 kb on + strand at 1410.709 kb on - strand at 1410.709 kb on - strand at 1410.709 kb on - strand at 1410.709 kb on - strand at 1410.709 kb on - strand at 1411.083 kb on + strand, within Rru_A1194 at 1411.084 kb on - strand, within Rru_A1194 at 1411.311 kb on + strand at 1411.311 kb on + strand at 1411.332 kb on - strand at 1411.389 kb on + strand at 1411.421 kb on + strand at 1411.422 kb on - strand at 1411.422 kb on - strand at 1411.520 kb on - strand at 1411.572 kb on + strand at 1411.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,409,737 + Rru_A1192 0.17 -0.8 1,409,737 + Rru_A1192 0.17 +0.9 1,409,738 - Rru_A1192 0.17 +0.4 1,409,928 + Rru_A1192 0.51 +1.0 1,409,929 - Rru_A1192 0.51 +0.5 1,409,929 - Rru_A1192 0.51 -0.0 1,410,124 + Rru_A1192 0.85 +1.6 1,410,129 + Rru_A1192 0.86 +0.2 1,410,130 - Rru_A1192 0.86 -0.0 1,410,708 + -0.0 1,410,708 + -0.0 1,410,708 + +1.1 1,410,708 + -2.0 1,410,708 + +1.4 1,410,709 - +1.6 1,410,709 - +1.4 1,410,709 - -1.0 1,410,709 - +0.4 1,410,709 - +1.2 1,411,083 + Rru_A1194 0.87 +0.7 1,411,084 - Rru_A1194 0.87 +1.2 1,411,311 + +1.3 1,411,311 + +2.0 1,411,332 - +0.3 1,411,389 + +1.6 1,411,421 + +2.0 1,411,422 - -0.0 1,411,422 - -0.0 1,411,520 - -0.0 1,411,572 + +2.3 1,411,645 + -0.0
Or see this region's nucleotide sequence