Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1167 and Rru_A1168 overlap by 8 nucleotides Rru_A1168 and Rru_A1169 overlap by 1 nucleotides Rru_A1169 and Rru_A1170 are separated by 43 nucleotides
Rru_A1167: Rru_A1167 - putative hydrogenase expression/formation protein HupK (NCBI), at 1,383,855 to 1,385,075
_A1167
Rru_A1168: Rru_A1168 - Hydrogenase expression/synthesis, HypA (NCBI), at 1,385,068 to 1,385,409
_A1168
Rru_A1169: Rru_A1169 - Hydrogenase accessory protein HypB (NCBI), at 1,385,409 to 1,386,215
_A1169
Rru_A1170: Rru_A1170 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 1,386,259 to 1,387,704
_A1170
Position (kb)
1385
1386 Strain fitness (log2 ratio)
-1
0
1
2 at 1384.745 kb on + strand, within Rru_A1167 at 1384.746 kb on - strand, within Rru_A1167 at 1385.350 kb on + strand, within Rru_A1168 at 1385.350 kb on + strand, within Rru_A1168 at 1385.351 kb on - strand, within Rru_A1168 at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.415 kb on - strand at 1385.604 kb on - strand, within Rru_A1169 at 1385.681 kb on - strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1386.055 kb on - strand, within Rru_A1169 at 1386.087 kb on + strand, within Rru_A1169 at 1386.088 kb on - strand, within Rru_A1169 at 1386.162 kb on + strand at 1386.213 kb on + strand at 1386.214 kb on - strand at 1386.214 kb on - strand at 1386.214 kb on - strand at 1386.276 kb on + strand at 1386.277 kb on - strand at 1386.284 kb on + strand at 1386.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,384,745 + Rru_A1167 0.73 -0.0 1,384,746 - Rru_A1167 0.73 -0.2 1,385,350 + Rru_A1168 0.82 +1.0 1,385,350 + Rru_A1168 0.82 +0.9 1,385,351 - Rru_A1168 0.83 -0.0 1,385,414 + +0.4 1,385,414 + -1.6 1,385,414 + -0.0 1,385,415 - +1.2 1,385,604 - Rru_A1169 0.24 -0.0 1,385,681 - Rru_A1169 0.34 +0.9 1,385,855 + Rru_A1169 0.55 +1.6 1,385,855 + Rru_A1169 0.55 +1.1 1,385,946 - Rru_A1169 0.67 +1.0 1,385,946 - Rru_A1169 0.67 -0.0 1,385,946 - Rru_A1169 0.67 -0.0 1,385,994 + Rru_A1169 0.72 -1.0 1,385,994 + Rru_A1169 0.72 -0.0 1,386,055 - Rru_A1169 0.80 +2.2 1,386,087 + Rru_A1169 0.84 +2.3 1,386,088 - Rru_A1169 0.84 +1.6 1,386,162 + -0.0 1,386,213 + -0.0 1,386,214 - +2.5 1,386,214 - -0.0 1,386,214 - +1.0 1,386,276 + +1.9 1,386,277 - -0.0 1,386,284 + -0.0 1,386,285 - +1.4
Or see this region's nucleotide sequence