Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1144

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1143 and Rru_A1144 are separated by 113 nucleotidesRru_A1144 and Rru_A1145 are separated by 11 nucleotidesRru_A1145 and Rru_A1146 overlap by 4 nucleotides Rru_A1143: Rru_A1143 - regulatory protein GntR (NCBI), at 1,349,175 to 1,350,665 _A1143 Rru_A1144: Rru_A1144 - Benzoate membrane transport protein (NCBI), at 1,350,779 to 1,352,005 _A1144 Rru_A1145: Rru_A1145 - Pyridoxal kinase (NCBI), at 1,352,017 to 1,352,868 _A1145 Rru_A1146: Rru_A1146 - 5-aminolevulinic acid synthase (NCBI), at 1,352,865 to 1,354,130 _A1146 Position (kb) 1350 1351 1352 1353Strain fitness (log2 ratio) -1 0 1 2 3at 1349.909 kb on + strand, within Rru_A1143at 1349.980 kb on + strand, within Rru_A1143at 1349.981 kb on - strand, within Rru_A1143at 1350.115 kb on + strand, within Rru_A1143at 1350.115 kb on + strand, within Rru_A1143at 1350.115 kb on + strand, within Rru_A1143at 1350.116 kb on - strand, within Rru_A1143at 1350.463 kb on + strand, within Rru_A1143at 1350.463 kb on + strand, within Rru_A1143at 1350.701 kb on - strandat 1350.719 kb on + strandat 1350.719 kb on + strandat 1350.817 kb on + strandat 1350.818 kb on - strandat 1350.818 kb on - strandat 1350.861 kb on - strandat 1350.861 kb on - strandat 1351.004 kb on - strand, within Rru_A1144at 1351.086 kb on - strand, within Rru_A1144at 1351.268 kb on + strand, within Rru_A1144at 1351.269 kb on - strand, within Rru_A1144at 1351.269 kb on - strand, within Rru_A1144at 1351.269 kb on - strand, within Rru_A1144at 1351.459 kb on + strand, within Rru_A1144at 1351.460 kb on - strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.475 kb on + strand, within Rru_A1144at 1351.476 kb on - strand, within Rru_A1144at 1351.476 kb on - strand, within Rru_A1144at 1351.476 kb on - strand, within Rru_A1144at 1351.477 kb on + strand, within Rru_A1144at 1351.477 kb on + strand, within Rru_A1144at 1351.477 kb on + strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.478 kb on - strand, within Rru_A1144at 1351.498 kb on - strand, within Rru_A1144at 1351.688 kb on + strand, within Rru_A1144at 1351.689 kb on - strand, within Rru_A1144at 1351.689 kb on - strand, within Rru_A1144at 1351.931 kb on + strandat 1351.931 kb on + strandat 1351.932 kb on - strandat 1352.254 kb on + strand, within Rru_A1145at 1352.254 kb on + strand, within Rru_A1145at 1352.254 kb on + strand, within Rru_A1145at 1352.256 kb on + strand, within Rru_A1145at 1352.269 kb on + strand, within Rru_A1145at 1352.270 kb on - strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.347 kb on + strand, within Rru_A1145at 1352.348 kb on - strand, within Rru_A1145at 1352.348 kb on - strand, within Rru_A1145at 1352.348 kb on - strand, within Rru_A1145at 1352.348 kb on - strand, within Rru_A1145at 1352.349 kb on + strand, within Rru_A1145at 1352.349 kb on + strand, within Rru_A1145at 1352.349 kb on + strand, within Rru_A1145at 1352.350 kb on - strand, within Rru_A1145at 1352.350 kb on - strand, within Rru_A1145at 1352.350 kb on - strand, within Rru_A1145at 1352.350 kb on - strand, within Rru_A1145at 1352.350 kb on - strand, within Rru_A1145at 1352.610 kb on + strand, within Rru_A1145at 1352.611 kb on - strand, within Rru_A1145at 1352.727 kb on + strand, within Rru_A1145at 1352.727 kb on + strand, within Rru_A1145at 1352.728 kb on - strand, within Rru_A1145at 1352.880 kb on + strandat 1352.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,349,909 + Rru_A1143 0.49 +1.2
1,349,980 + Rru_A1143 0.54 +0.8
1,349,981 - Rru_A1143 0.54 +1.4
1,350,115 + Rru_A1143 0.63 -0.6
1,350,115 + Rru_A1143 0.63 -0.0
1,350,115 + Rru_A1143 0.63 +0.3
1,350,116 - Rru_A1143 0.63 +1.8
1,350,463 + Rru_A1143 0.86 +1.0
1,350,463 + Rru_A1143 0.86 +1.4
1,350,701 - +1.4
1,350,719 + +1.0
1,350,719 + +0.6
1,350,817 + +1.3
1,350,818 - -0.0
1,350,818 - +0.5
1,350,861 - +0.6
1,350,861 - +1.3
1,351,004 - Rru_A1144 0.18 +1.6
1,351,086 - Rru_A1144 0.25 -1.6
1,351,268 + Rru_A1144 0.40 -0.0
1,351,269 - Rru_A1144 0.40 +1.4
1,351,269 - Rru_A1144 0.40 -0.0
1,351,269 - Rru_A1144 0.40 -0.2
1,351,459 + Rru_A1144 0.55 +1.5
1,351,460 - Rru_A1144 0.56 +1.4
1,351,475 + Rru_A1144 0.57 +2.4
1,351,475 + Rru_A1144 0.57 -0.0
1,351,475 + Rru_A1144 0.57 +0.1
1,351,475 + Rru_A1144 0.57 -0.0
1,351,475 + Rru_A1144 0.57 +2.7
1,351,475 + Rru_A1144 0.57 +1.5
1,351,475 + Rru_A1144 0.57 -0.0
1,351,475 + Rru_A1144 0.57 +1.8
1,351,476 - Rru_A1144 0.57 +1.1
1,351,476 - Rru_A1144 0.57 +0.9
1,351,476 - Rru_A1144 0.57 -0.0
1,351,477 + Rru_A1144 0.57 +2.3
1,351,477 + Rru_A1144 0.57 +1.0
1,351,477 + Rru_A1144 0.57 +2.2
1,351,478 - Rru_A1144 0.57 -0.2
1,351,478 - Rru_A1144 0.57 +0.7
1,351,478 - Rru_A1144 0.57 +1.2
1,351,478 - Rru_A1144 0.57 -0.0
1,351,478 - Rru_A1144 0.57 +0.7
1,351,478 - Rru_A1144 0.57 +1.9
1,351,498 - Rru_A1144 0.59 -0.0
1,351,688 + Rru_A1144 0.74 +0.3
1,351,689 - Rru_A1144 0.74 -0.0
1,351,689 - Rru_A1144 0.74 +2.0
1,351,931 + +0.6
1,351,931 + +0.9
1,351,932 - -0.0
1,352,254 + Rru_A1145 0.28 -0.0
1,352,254 + Rru_A1145 0.28 +1.3
1,352,254 + Rru_A1145 0.28 -0.0
1,352,256 + Rru_A1145 0.28 +1.8
1,352,269 + Rru_A1145 0.30 +1.5
1,352,270 - Rru_A1145 0.30 -1.6
1,352,347 + Rru_A1145 0.39 -0.0
1,352,347 + Rru_A1145 0.39 -0.0
1,352,347 + Rru_A1145 0.39 +1.4
1,352,347 + Rru_A1145 0.39 +1.4
1,352,347 + Rru_A1145 0.39 -0.0
1,352,347 + Rru_A1145 0.39 +1.4
1,352,347 + Rru_A1145 0.39 +1.2
1,352,347 + Rru_A1145 0.39 +0.8
1,352,347 + Rru_A1145 0.39 -0.0
1,352,348 - Rru_A1145 0.39 -0.0
1,352,348 - Rru_A1145 0.39 +0.3
1,352,348 - Rru_A1145 0.39 +0.8
1,352,348 - Rru_A1145 0.39 -0.0
1,352,349 + Rru_A1145 0.39 -0.0
1,352,349 + Rru_A1145 0.39 +2.1
1,352,349 + Rru_A1145 0.39 +2.8
1,352,350 - Rru_A1145 0.39 -0.0
1,352,350 - Rru_A1145 0.39 -0.0
1,352,350 - Rru_A1145 0.39 +0.6
1,352,350 - Rru_A1145 0.39 +0.9
1,352,350 - Rru_A1145 0.39 +1.3
1,352,610 + Rru_A1145 0.70 -0.0
1,352,611 - Rru_A1145 0.70 +1.3
1,352,727 + Rru_A1145 0.83 -0.0
1,352,727 + Rru_A1145 0.83 -0.0
1,352,728 - Rru_A1145 0.83 +1.8
1,352,880 + -1.0
1,352,915 - +2.9

Or see this region's nucleotide sequence