Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1123

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1122 and Rru_A1123 are separated by 57 nucleotidesRru_A1123 and Rru_A1124 are separated by 9 nucleotides Rru_A1122: Rru_A1122 - Beta-lactamase-like (NCBI), at 1,323,541 to 1,324,518 _A1122 Rru_A1123: Rru_A1123 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 1,324,576 to 1,325,091 _A1123 Rru_A1124: Rru_A1124 - D-lactate dehydrogenase (cytochrome) (NCBI), at 1,325,101 to 1,326,567 _A1124 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -1 0 1 2at 1323.603 kb on - strandat 1323.717 kb on + strand, within Rru_A1122at 1323.717 kb on + strand, within Rru_A1122at 1323.765 kb on + strand, within Rru_A1122at 1323.886 kb on - strand, within Rru_A1122at 1323.982 kb on + strand, within Rru_A1122at 1323.983 kb on - strand, within Rru_A1122at 1323.983 kb on - strand, within Rru_A1122at 1324.070 kb on + strand, within Rru_A1122at 1324.162 kb on + strand, within Rru_A1122at 1324.163 kb on - strand, within Rru_A1122at 1324.163 kb on - strand, within Rru_A1122at 1324.163 kb on - strand, within Rru_A1122at 1324.242 kb on - strand, within Rru_A1122at 1324.353 kb on + strand, within Rru_A1122at 1324.662 kb on + strand, within Rru_A1123at 1324.662 kb on + strand, within Rru_A1123at 1324.748 kb on + strand, within Rru_A1123at 1324.748 kb on + strand, within Rru_A1123at 1324.748 kb on + strand, within Rru_A1123at 1324.748 kb on + strand, within Rru_A1123at 1324.769 kb on - strand, within Rru_A1123at 1324.769 kb on - strand, within Rru_A1123at 1324.906 kb on - strand, within Rru_A1123at 1324.966 kb on + strand, within Rru_A1123at 1324.966 kb on + strand, within Rru_A1123at 1324.967 kb on - strand, within Rru_A1123at 1324.967 kb on - strand, within Rru_A1123at 1325.296 kb on + strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.297 kb on - strand, within Rru_A1124at 1325.382 kb on + strand, within Rru_A1124at 1325.430 kb on + strand, within Rru_A1124at 1325.756 kb on - strand, within Rru_A1124at 1325.756 kb on - strand, within Rru_A1124at 1325.756 kb on - strand, within Rru_A1124at 1325.978 kb on - strand, within Rru_A1124at 1325.993 kb on - strand, within Rru_A1124at 1325.993 kb on - strand, within Rru_A1124

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,323,603 - +1.0
1,323,717 + Rru_A1122 0.18 -0.0
1,323,717 + Rru_A1122 0.18 -0.0
1,323,765 + Rru_A1122 0.23 +0.9
1,323,886 - Rru_A1122 0.35 +1.0
1,323,982 + Rru_A1122 0.45 +1.0
1,323,983 - Rru_A1122 0.45 +1.6
1,323,983 - Rru_A1122 0.45 +0.8
1,324,070 + Rru_A1122 0.54 -0.0
1,324,162 + Rru_A1122 0.63 +0.6
1,324,163 - Rru_A1122 0.64 +1.0
1,324,163 - Rru_A1122 0.64 +0.3
1,324,163 - Rru_A1122 0.64 +0.7
1,324,242 - Rru_A1122 0.72 +0.9
1,324,353 + Rru_A1122 0.83 +0.3
1,324,662 + Rru_A1123 0.17 -0.0
1,324,662 + Rru_A1123 0.17 +1.1
1,324,748 + Rru_A1123 0.33 +1.4
1,324,748 + Rru_A1123 0.33 +1.2
1,324,748 + Rru_A1123 0.33 +0.9
1,324,748 + Rru_A1123 0.33 +0.9
1,324,769 - Rru_A1123 0.37 +2.0
1,324,769 - Rru_A1123 0.37 -1.0
1,324,906 - Rru_A1123 0.64 +0.5
1,324,966 + Rru_A1123 0.76 -0.0
1,324,966 + Rru_A1123 0.76 +1.0
1,324,967 - Rru_A1123 0.76 +1.3
1,324,967 - Rru_A1123 0.76 +1.0
1,325,296 + Rru_A1124 0.13 -0.0
1,325,297 - Rru_A1124 0.13 -0.2
1,325,297 - Rru_A1124 0.13 +1.9
1,325,297 - Rru_A1124 0.13 -1.0
1,325,297 - Rru_A1124 0.13 +1.8
1,325,297 - Rru_A1124 0.13 +0.3
1,325,297 - Rru_A1124 0.13 -0.0
1,325,382 + Rru_A1124 0.19 +1.4
1,325,430 + Rru_A1124 0.22 -0.4
1,325,756 - Rru_A1124 0.45 +1.5
1,325,756 - Rru_A1124 0.45 +0.4
1,325,756 - Rru_A1124 0.45 -0.0
1,325,978 - Rru_A1124 0.60 +1.3
1,325,993 - Rru_A1124 0.61 +1.0
1,325,993 - Rru_A1124 0.61 -0.0

Or see this region's nucleotide sequence