Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1110

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,304,779	+		Rru_A1109	0.77	+0.8
1,304,779	+		Rru_A1109	0.77	+0.2
1,304,779	+		Rru_A1109	0.77	-0.0
1,304,779	+		Rru_A1109	0.77	-0.0
1,304,780	-		Rru_A1109	0.77	+1.2
1,304,780	-		Rru_A1109	0.77	+1.1
1,304,790	+		Rru_A1109	0.78	-0.0
1,304,790	+		Rru_A1109	0.78	+1.7
1,304,791	-		Rru_A1109	0.78	+2.3
1,304,791	-		Rru_A1109	0.78	+1.4
1,304,898	+		Rru_A1109	0.84	+1.1
1,304,914	-		Rru_A1109	0.85	+0.2
1,304,914	-		Rru_A1109	0.85	-0.0
1,304,914	-		Rru_A1109	0.85	+1.1
1,304,966	+		Rru_A1109	0.88	-0.0
1,304,994	+		Rru_A1109	0.90	+1.0
1,304,994	+		Rru_A1109	0.90	+1.2
1,304,995	-		Rru_A1109	0.90	-0.2
1,304,995	-		Rru_A1109	0.90	-0.0
1,304,995	-		Rru_A1109	0.90	+1.0
1,305,109	+				-0.0
1,305,109	+				+1.3
1,305,110	-				+1.0
1,305,146	-				+1.2
1,305,211	+				+2.1
1,305,211	+				+1.9
1,305,212	-				-0.0
1,305,212	-				+1.6
1,305,212	-				-2.0
1,305,212	-				+3.9
1,305,212	-				+0.7
1,305,212	-				+0.7
1,305,252	+				+3.2
1,305,306	-				-0.0
1,305,306	-				+1.0
1,305,332	+				+1.2
1,305,475	-				-0.0
1,305,486	-				-0.0
1,305,539	-				+0.6
1,305,655	+		Rru_A1110	0.13	+1.3
1,305,656	-		Rru_A1110	0.13	+1.4
1,305,865	-		Rru_A1110	0.36	-0.0
1,306,090	+		Rru_A1110	0.61	+2.4
1,306,090	+		Rru_A1110	0.61	+0.3
1,306,090	+		Rru_A1110	0.61	+1.6
1,306,090	+		Rru_A1110	0.61	+1.2
1,306,091	-		Rru_A1110	0.62	-0.0
1,306,091	-		Rru_A1110	0.62	+1.3
1,306,091	-		Rru_A1110	0.62	+1.4
1,306,091	-		Rru_A1110	0.62	-1.6
1,306,121	+		Rru_A1110	0.65	-0.0
1,306,121	+		Rru_A1110	0.65	+1.8
1,306,121	+		Rru_A1110	0.65	+0.7
1,306,121	+		Rru_A1110	0.65	+1.0
1,306,121	+		Rru_A1110	0.65	+1.7
1,306,121	+		Rru_A1110	0.65	+1.0
1,306,121	+		Rru_A1110	0.65	+1.6
1,306,122	-		Rru_A1110	0.65	+1.9
1,306,122	-		Rru_A1110	0.65	+2.2
1,306,122	-		Rru_A1110	0.65	+1.6
1,306,122	-		Rru_A1110	0.65	+1.2
1,306,122	-		Rru_A1110	0.65	-0.0
1,306,122	-		Rru_A1110	0.65	+1.3
1,306,122	-		Rru_A1110	0.65	+3.9
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	+3.3
1,306,126	+		Rru_A1110	0.65	+1.4
1,306,126	+		Rru_A1110	0.65	+1.6
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	+2.3
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	+1.9
1,306,126	+		Rru_A1110	0.65	+1.4
1,306,126	+		Rru_A1110	0.65	+1.3
1,306,126	+		Rru_A1110	0.65	+1.2
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	+1.6
1,306,126	+		Rru_A1110	0.65	+1.6
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,126	+		Rru_A1110	0.65	-0.0
1,306,127	-		Rru_A1110	0.66	+1.4
1,306,127	-		Rru_A1110	0.66	+1.5
1,306,127	-		Rru_A1110	0.66	+1.5
1,306,127	-		Rru_A1110	0.66	+1.5
1,306,127	-		Rru_A1110	0.66	+1.8
1,306,127	-		Rru_A1110	0.66	+1.0
1,306,127	-		Rru_A1110	0.66	+1.3
1,306,127	-		Rru_A1110	0.66	+1.6
1,306,127	-		Rru_A1110	0.66	-0.0
1,306,127	-		Rru_A1110	0.66	+1.4
1,306,127	-		Rru_A1110	0.66	+1.6
1,306,334	-		Rru_A1110	0.89	-0.0
1,306,334	-		Rru_A1110	0.89	+1.8
1,306,334	-		Rru_A1110	0.89	+1.4
1,306,381	+				+1.9
1,306,381	+				+2.0
1,306,381	+				+0.7
1,306,382	-				+2.0
1,306,382	-				-0.0
1,306,382	-				-1.0
1,306,451	+				+1.7
1,306,451	+				+1.0
1,306,451	+				+1.4
1,306,451	+				-0.0
1,306,451	+				+1.9
1,306,452	-				+1.4
1,306,488	+				+1.4
1,306,534	+				+1.5
1,306,534	+				+1.5
1,306,534	+				-0.0
1,306,534	+				-0.0
1,306,534	+				+1.4
1,306,535	-				+1.4
1,306,630	-				+1.8
1,306,630	-				-0.0
1,306,630	-				+1.5
1,306,634	+				+1.7
1,306,634	+				+1.4
1,306,634	+				+1.5
1,306,657	+				+3.5
1,306,764	+		Rru_A1111	0.10	+1.8
1,306,764	+		Rru_A1111	0.10	+2.0
1,306,779	+		Rru_A1111	0.12	+0.6
1,306,779	+		Rru_A1111	0.12	+1.3
1,306,780	-		Rru_A1111	0.12	-0.0
1,306,780	-		Rru_A1111	0.12	+1.9
1,306,780	-		Rru_A1111	0.12	+2.0
1,306,780	-		Rru_A1111	0.12	-0.0
1,306,847	+		Rru_A1111	0.19	+0.7
1,306,848	-		Rru_A1111	0.19	+1.3
1,306,848	-		Rru_A1111	0.19	-1.0
1,306,848	-		Rru_A1111	0.19	+2.2
1,306,895	+		Rru_A1111	0.23	+2.2
1,306,895	+		Rru_A1111	0.23	+0.9
1,306,895	+		Rru_A1111	0.23	+1.8
1,306,896	-		Rru_A1111	0.23	+1.8
1,306,896	-		Rru_A1111	0.23	+1.5
1,307,111	-		Rru_A1111	0.44	+1.8
1,307,111	-		Rru_A1111	0.44	+1.7
1,307,111	-		Rru_A1111	0.44	+1.9
1,307,198	+		Rru_A1111	0.53	+1.9
1,307,199	-		Rru_A1111	0.53	+1.9
1,307,199	-		Rru_A1111	0.53	-0.0
1,307,348	+		Rru_A1111	0.67	+1.3
1,307,371	+		Rru_A1111	0.69	-0.0
1,307,371	+		Rru_A1111	0.69	+1.9
1,307,371	+		Rru_A1111	0.69	-0.0
1,307,371	+		Rru_A1111	0.69	+1.0
1,307,372	-		Rru_A1111	0.69	-0.0
1,307,372	-		Rru_A1111	0.69	+1.9
1,307,372	-		Rru_A1111	0.69	+2.0