Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1053

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,244,831	+				-0.0
1,244,831	+				-0.0
1,244,888	+				-0.0
1,244,947	+				+1.9
1,244,948	-				-0.0
1,245,002	+				-0.0
1,245,076	+		Rru_A1052	0.12	-1.0
1,245,146	-		Rru_A1052	0.21	-0.0
1,245,210	-		Rru_A1052	0.29	+1.2
1,245,458	+		Rru_A1052	0.62	+1.2
1,245,460	+		Rru_A1052	0.62	+1.9
1,245,460	+		Rru_A1052	0.62	+0.7
1,245,460	+		Rru_A1052	0.62	-0.0
1,245,460	+		Rru_A1052	0.62	+0.9
1,245,680	+				+1.0
1,245,681	-				-1.0
1,245,742	+				+0.1
1,245,742	+				+1.7
1,245,743	-				+1.4
1,245,767	+				+0.9
1,245,768	-				+2.0
1,245,768	-				+2.4
1,245,768	-				+0.5
1,245,769	+				-0.2
1,245,769	+				-0.0
1,245,769	+				-0.0
1,245,770	-				+1.0
1,245,770	-				+1.3
1,245,770	-				+1.4
1,245,770	-				+1.5
1,245,770	-				+1.0
1,245,770	-				+1.8
1,245,770	-				-0.0
1,245,770	-				+0.8
1,245,796	-				+2.0
1,245,796	-				-0.0
1,246,045	-		Rru_A1053	0.18	+0.8
1,246,045	-		Rru_A1053	0.18	-0.0
1,246,357	+		Rru_A1053	0.38	+0.3
1,246,357	+		Rru_A1053	0.38	+1.2
1,246,357	+		Rru_A1053	0.38	+1.0
1,246,357	+		Rru_A1053	0.38	+0.9
1,246,357	+		Rru_A1053	0.38	+0.7
1,246,357	+		Rru_A1053	0.38	-0.0
1,246,468	-		Rru_A1053	0.45	-1.0
1,246,485	+		Rru_A1053	0.46	-0.0
1,246,486	-		Rru_A1053	0.46	-0.0
1,246,556	+		Rru_A1053	0.51	+0.6
1,246,556	+		Rru_A1053	0.51	+0.9
1,246,556	+		Rru_A1053	0.51	-0.0
1,246,692	+		Rru_A1053	0.59	+3.3
1,246,692	+		Rru_A1053	0.59	+0.9
1,246,693	-		Rru_A1053	0.59	+2.1
1,246,693	-		Rru_A1053	0.59	+0.2
1,246,693	-		Rru_A1053	0.59	+1.5
1,246,781	+		Rru_A1053	0.65	+0.5
1,246,781	+		Rru_A1053	0.65	+1.0
1,246,781	+		Rru_A1053	0.65	-0.0
1,246,781	+		Rru_A1053	0.65	-0.0
1,246,782	-		Rru_A1053	0.65	+0.1
1,246,782	-		Rru_A1053	0.65	-0.0
1,246,782	-		Rru_A1053	0.65	+0.1
1,246,842	+		Rru_A1053	0.69	+0.6
1,246,842	+		Rru_A1053	0.69	+0.8
1,246,843	-		Rru_A1053	0.69	+0.7
1,246,843	-		Rru_A1053	0.69	+2.4
1,246,843	-		Rru_A1053	0.69	-0.0
1,246,843	-		Rru_A1053	0.69	+1.8
1,246,843	-		Rru_A1053	0.69	-0.0
1,246,843	-		Rru_A1053	0.69	-0.2
1,246,843	-		Rru_A1053	0.69	+0.3
1,246,910	+		Rru_A1053	0.73	-0.3
1,246,910	+		Rru_A1053	0.73	-0.0
1,246,910	+		Rru_A1053	0.73	-0.0
1,246,910	+		Rru_A1053	0.73	-0.0
1,246,910	+		Rru_A1053	0.73	-0.0
1,246,911	-		Rru_A1053	0.73	+2.0
1,246,911	-		Rru_A1053	0.73	+2.5
1,246,911	-		Rru_A1053	0.73	+0.7
1,246,911	-		Rru_A1053	0.73	-0.0
1,247,328	+				+0.5
1,247,328	+				-0.0
1,247,329	-				-0.0
1,247,329	-				-0.0
1,247,442	+				-0.0
1,247,442	+				+0.3
1,247,476	+				+0.4
1,247,477	-				+2.3
1,247,540	-				+0.9
1,247,798	-		Rru_A1054	0.18	-0.0
1,247,798	-		Rru_A1054	0.18	+1.2
1,247,951	+		Rru_A1054	0.30	-0.0
1,247,992	+		Rru_A1054	0.33	+0.5
1,247,993	-		Rru_A1054	0.33	+0.5
1,248,060	+		Rru_A1054	0.38	+1.9
1,248,060	+		Rru_A1054	0.38	+1.0
1,248,060	+		Rru_A1054	0.38	-0.0
1,248,061	-		Rru_A1054	0.38	+1.1
1,248,061	-		Rru_A1054	0.38	+0.5
1,248,061	-		Rru_A1054	0.38	+1.4
1,248,061	-		Rru_A1054	0.38	+1.3