Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1040

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,232,219	-		Rru_A1039	0.23	+0.4
1,232,219	-		Rru_A1039	0.23	-0.1
1,232,219	-		Rru_A1039	0.23	-0.0
1,232,219	-		Rru_A1039	0.23	+2.1
1,232,362	+		Rru_A1039	0.39	-0.0
1,232,362	+		Rru_A1039	0.39	-0.0
1,232,362	+		Rru_A1039	0.39	-0.0
1,232,363	-		Rru_A1039	0.39	+1.6
1,232,936	+				+1.6
1,232,937	-				-0.0
1,232,957	+				+0.6
1,232,958	-				-0.0
1,232,958	-				+0.6
1,232,958	-				-0.0
1,232,958	-				+2.4
1,233,006	-				+1.9
1,233,296	+		Rru_A1040	0.22	+0.9
1,233,308	+		Rru_A1040	0.24	-0.0
1,233,308	+		Rru_A1040	0.24	-0.0
1,233,308	+		Rru_A1040	0.24	-0.0
1,233,308	+		Rru_A1040	0.24	+0.3
1,233,309	-		Rru_A1040	0.24	+0.5
1,233,309	-		Rru_A1040	0.24	-0.0
1,233,423	+		Rru_A1040	0.34	-0.0
1,233,424	-		Rru_A1040	0.34	-0.0
1,233,471	+		Rru_A1040	0.38	+0.4
1,233,472	-		Rru_A1040	0.38	+1.9
1,233,624	+		Rru_A1040	0.52	+2.0
1,233,699	+		Rru_A1040	0.59	+0.4
1,233,699	+		Rru_A1040	0.59	+1.7
1,233,700	-		Rru_A1040	0.59	-0.4
1,233,700	-		Rru_A1040	0.59	+3.7
1,233,701	+		Rru_A1040	0.59	+0.5
1,233,702	-		Rru_A1040	0.59	+0.5
1,233,702	-		Rru_A1040	0.59	-0.0
1,233,950	+		Rru_A1040	0.82	+1.9
1,233,951	-		Rru_A1040	0.82	+1.0
1,234,198	+				+1.3
1,234,198	+				+0.9
1,234,198	+				+0.6
1,234,198	+				+0.6
1,234,198	+				-0.0
1,234,198	+				+1.4
1,234,198	+				+0.5
1,234,352	+				+2.1
1,234,353	-				-0.0
1,234,353	-				-0.0
1,234,353	-				-0.0
1,234,516	+		Rru_A1041	0.11	+1.8
1,234,517	-		Rru_A1041	0.12	+1.7
1,234,517	-		Rru_A1041	0.12	-0.0
1,234,517	-		Rru_A1041	0.12	-0.0
1,234,517	-		Rru_A1041	0.12	+1.2
1,234,603	+		Rru_A1041	0.21	+1.2
1,234,604	-		Rru_A1041	0.21	-0.0
1,234,604	-		Rru_A1041	0.21	-0.0
1,234,783	-		Rru_A1041	0.40	+2.2
1,234,783	-		Rru_A1041	0.40	-0.0
1,234,896	+		Rru_A1041	0.53	-0.3
1,234,896	+		Rru_A1041	0.53	-0.8
1,234,897	-		Rru_A1041	0.53	+1.5
1,234,897	-		Rru_A1041	0.53	-0.0
1,234,921	+		Rru_A1041	0.55	-0.6
1,234,921	+		Rru_A1041	0.55	+1.1
1,234,971	+		Rru_A1041	0.61	-0.0
1,234,971	+		Rru_A1041	0.61	+1.7
1,234,972	-		Rru_A1041	0.61	+0.9
1,234,972	-		Rru_A1041	0.61	+0.5
1,234,972	-		Rru_A1041	0.61	+2.0
1,234,972	-		Rru_A1041	0.61	-1.0
1,234,972	-		Rru_A1041	0.61	+2.3
1,234,972	-		Rru_A1041	0.61	+0.1
1,234,972	-		Rru_A1041	0.61	+1.4
1,234,972	-		Rru_A1041	0.61	+0.7
1,234,984	+		Rru_A1041	0.62	-0.0
1,234,985	-		Rru_A1041	0.62	+1.2
1,234,985	-		Rru_A1041	0.62	-1.2
1,234,985	-		Rru_A1041	0.62	+1.0
1,234,985	-		Rru_A1041	0.62	+0.7