Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1003

Experiment: Succinic Acid; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 9 uM
1,188,390	+		Rru_A1002	0.15	+1.9
1,188,424	-		Rru_A1002	0.18	+2.2
1,188,594	+		Rru_A1002	0.33	+1.2
1,188,594	+		Rru_A1002	0.33	+1.7
1,188,594	+		Rru_A1002	0.33	+1.7
1,188,595	-		Rru_A1002	0.33	+1.6
1,188,596	+		Rru_A1002	0.33	+1.4
1,188,596	+		Rru_A1002	0.33	-0.0
1,188,596	+		Rru_A1002	0.33	-0.0
1,188,596	+		Rru_A1002	0.33	-0.0
1,188,596	+		Rru_A1002	0.33	-0.0
1,188,597	-		Rru_A1002	0.34	+1.5
1,188,597	-		Rru_A1002	0.34	+0.5
1,188,597	-		Rru_A1002	0.34	-0.0
1,188,597	-		Rru_A1002	0.34	-1.6
1,188,597	-		Rru_A1002	0.34	-0.0
1,188,619	-		Rru_A1002	0.36	-0.0
1,188,652	-		Rru_A1002	0.39	+1.5
1,188,830	+		Rru_A1002	0.55	-0.8
1,188,830	+		Rru_A1002	0.55	+3.1
1,188,830	+		Rru_A1002	0.55	+1.3
1,188,831	-		Rru_A1002	0.55	-0.0
1,188,887	-		Rru_A1002	0.60	+1.7
1,189,064	+		Rru_A1002	0.76	+1.4
1,189,064	+		Rru_A1002	0.76	+1.7
1,189,065	-		Rru_A1002	0.76	+1.6
1,189,065	-		Rru_A1002	0.76	-0.5
1,189,361	+				+1.4
1,189,362	-				+1.4
1,189,362	-				-0.0
1,189,403	+				-0.0
1,189,404	-				+1.0
1,189,404	-				-0.0
1,189,701	-		Rru_A1003	0.31	+1.4
1,189,995	+		Rru_A1003	0.56	-0.0
1,189,995	+		Rru_A1003	0.56	-1.0
1,189,995	+		Rru_A1003	0.56	-0.0
1,189,996	-		Rru_A1003	0.56	-0.0
1,189,996	-		Rru_A1003	0.56	-0.0
1,189,996	-		Rru_A1003	0.56	+0.8
1,189,996	-		Rru_A1003	0.56	+1.2
1,189,997	+		Rru_A1003	0.56	+0.9
1,189,997	+		Rru_A1003	0.56	-0.0
1,189,997	+		Rru_A1003	0.56	-0.0
1,189,997	+		Rru_A1003	0.56	+1.4
1,189,997	+		Rru_A1003	0.56	+2.0
1,189,997	+		Rru_A1003	0.56	+1.3
1,189,998	-		Rru_A1003	0.56	+1.6
1,189,998	-		Rru_A1003	0.56	+0.2
1,189,998	-		Rru_A1003	0.56	+1.6
1,190,082	-		Rru_A1003	0.63	+0.7
1,190,132	+		Rru_A1003	0.67	+1.7
1,190,132	+		Rru_A1003	0.67	-0.0
1,190,132	+		Rru_A1003	0.67	-0.0
1,190,241	+		Rru_A1003	0.76	+1.7
1,190,241	+		Rru_A1003	0.76	+1.1
1,190,241	+		Rru_A1003	0.76	-0.0
1,190,242	-		Rru_A1003	0.76	+0.9
1,190,242	-		Rru_A1003	0.76	+1.9
1,190,242	-		Rru_A1003	0.76	-0.0
1,190,279	+		Rru_A1003	0.79	-0.0
1,190,279	+		Rru_A1003	0.79	+0.5
1,190,279	+		Rru_A1003	0.79	+1.0
1,190,279	+		Rru_A1003	0.79	-0.0
1,190,279	+		Rru_A1003	0.79	-0.0
1,190,279	+		Rru_A1003	0.79	+1.0
1,190,280	-		Rru_A1003	0.79	+2.0
1,190,280	-		Rru_A1003	0.79	+2.4
1,190,280	-		Rru_A1003	0.79	+0.5
1,190,280	-		Rru_A1003	0.79	+0.6
1,190,373	+		Rru_A1003	0.87	+1.3
1,190,738	+		Rru_A1004	0.11	+1.2
1,190,739	-		Rru_A1004	0.11	-0.0
1,190,765	+		Rru_A1004	0.14	+1.3
1,190,765	+		Rru_A1004	0.14	+1.4
1,190,765	+		Rru_A1004	0.14	-0.0
1,190,766	-		Rru_A1004	0.14	+2.1
1,190,766	-		Rru_A1004	0.14	-0.0
1,190,766	-		Rru_A1004	0.14	+0.8
1,190,899	-		Rru_A1004	0.27	-0.0
1,191,042	-		Rru_A1004	0.41	+0.9
1,191,134	+		Rru_A1004	0.50	-0.0
1,191,134	+		Rru_A1004	0.50	+2.2
1,191,135	-		Rru_A1004	0.50	+3.0
1,191,158	+		Rru_A1004	0.52	+0.6
1,191,159	-		Rru_A1004	0.52	-0.0
1,191,198	+		Rru_A1004	0.56	+1.5
1,191,199	-		Rru_A1004	0.56	-0.0
1,191,199	-		Rru_A1004	0.56	-0.0
1,191,275	+		Rru_A1004	0.63	-0.0
1,191,275	+		Rru_A1004	0.63	+0.4
1,191,275	+		Rru_A1004	0.63	-0.0
1,191,278	+		Rru_A1004	0.64	+1.7
1,191,278	+		Rru_A1004	0.64	-0.0
1,191,279	-		Rru_A1004	0.64	+2.3
1,191,459	+		Rru_A1004	0.81	-0.0
1,191,459	+		Rru_A1004	0.81	+1.0
1,191,460	-		Rru_A1004	0.82	-0.0
1,191,460	-		Rru_A1004	0.82	+0.8