Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0998

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0996 and Rru_A0997 are separated by 5 nucleotidesRru_A0997 and Rru_A0998 overlap by 4 nucleotidesRru_A0998 and Rru_A0999 are separated by 3 nucleotidesRru_A0999 and Rru_A1000 are separated by 9 nucleotides Rru_A0996: Rru_A0996 - Leucine rich repeat variant (NCBI), at 1,184,734 to 1,185,558 _A0996 Rru_A0997: Rru_A0997 - NifZ (NCBI), at 1,185,564 to 1,185,857 _A0997 Rru_A0998: Rru_A0998 - NifT/FixU (NCBI), at 1,185,854 to 1,186,069 _A0998 Rru_A0999: Rru_A0999 - hypothetical protein (NCBI), at 1,186,073 to 1,186,930 _A0999 Rru_A1000: Rru_A1000 - hypothetical protein (NCBI), at 1,186,940 to 1,187,254 _A1000 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -1 0 1 2 3at 1184.980 kb on + strand, within Rru_A0996at 1184.981 kb on - strand, within Rru_A0996at 1185.169 kb on + strand, within Rru_A0996at 1185.169 kb on + strand, within Rru_A0996at 1185.170 kb on - strand, within Rru_A0996at 1185.397 kb on + strand, within Rru_A0996at 1185.397 kb on + strand, within Rru_A0996at 1185.450 kb on + strand, within Rru_A0996at 1185.450 kb on + strand, within Rru_A0996at 1185.613 kb on + strand, within Rru_A0997at 1185.613 kb on + strand, within Rru_A0997at 1185.613 kb on + strand, within Rru_A0997at 1185.614 kb on - strand, within Rru_A0997at 1185.614 kb on - strand, within Rru_A0997at 1185.636 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.665 kb on + strand, within Rru_A0997at 1185.666 kb on - strand, within Rru_A0997at 1185.666 kb on - strand, within Rru_A0997at 1185.735 kb on + strand, within Rru_A0997at 1185.736 kb on - strand, within Rru_A0997at 1185.736 kb on - strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.768 kb on + strand, within Rru_A0997at 1185.769 kb on - strand, within Rru_A0997at 1185.769 kb on - strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.771 kb on + strand, within Rru_A0997at 1185.772 kb on - strand, within Rru_A0997at 1185.772 kb on - strand, within Rru_A0997at 1185.777 kb on + strand, within Rru_A0997at 1185.777 kb on + strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.778 kb on - strand, within Rru_A0997at 1185.896 kb on + strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1185.897 kb on - strand, within Rru_A0998at 1186.287 kb on - strand, within Rru_A0999at 1186.298 kb on + strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.299 kb on - strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.421 kb on + strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.422 kb on - strand, within Rru_A0999at 1186.583 kb on + strand, within Rru_A0999at 1186.584 kb on - strand, within Rru_A0999at 1186.584 kb on - strand, within Rru_A0999at 1186.640 kb on + strand, within Rru_A0999at 1186.640 kb on + strand, within Rru_A0999at 1186.641 kb on - strand, within Rru_A0999at 1186.641 kb on - strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.763 kb on + strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.764 kb on - strand, within Rru_A0999at 1186.802 kb on + strand, within Rru_A0999at 1186.884 kb on + strandat 1186.884 kb on + strandat 1186.884 kb on + strandat 1186.885 kb on - strandat 1187.008 kb on + strand, within Rru_A1000at 1187.008 kb on + strand, within Rru_A1000at 1187.008 kb on + strand, within Rru_A1000at 1187.009 kb on - strand, within Rru_A1000at 1187.009 kb on - strand, within Rru_A1000at 1187.009 kb on - strand, within Rru_A1000at 1187.009 kb on - strand, within Rru_A1000

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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1,184,980 + Rru_A0996 0.30 -0.0
1,184,981 - Rru_A0996 0.30 -0.0
1,185,169 + Rru_A0996 0.53 +1.0
1,185,169 + Rru_A0996 0.53 -0.0
1,185,170 - Rru_A0996 0.53 -0.8
1,185,397 + Rru_A0996 0.80 +1.4
1,185,397 + Rru_A0996 0.80 +0.9
1,185,450 + Rru_A0996 0.87 +1.0
1,185,450 + Rru_A0996 0.87 +1.2
1,185,613 + Rru_A0997 0.17 -0.0
1,185,613 + Rru_A0997 0.17 +1.8
1,185,613 + Rru_A0997 0.17 +1.1
1,185,614 - Rru_A0997 0.17 -0.0
1,185,614 - Rru_A0997 0.17 -0.0
1,185,636 + Rru_A0997 0.24 +1.4
1,185,665 + Rru_A0997 0.34 +1.1
1,185,665 + Rru_A0997 0.34 -0.0
1,185,665 + Rru_A0997 0.34 +1.2
1,185,666 - Rru_A0997 0.35 +1.7
1,185,666 - Rru_A0997 0.35 +1.5
1,185,735 + Rru_A0997 0.58 -0.0
1,185,736 - Rru_A0997 0.59 -0.0
1,185,736 - Rru_A0997 0.59 +1.2
1,185,768 + Rru_A0997 0.69 +2.5
1,185,768 + Rru_A0997 0.69 +1.2
1,185,768 + Rru_A0997 0.69 +2.2
1,185,769 - Rru_A0997 0.70 +0.8
1,185,769 - Rru_A0997 0.70 -0.0
1,185,771 + Rru_A0997 0.70 -0.0
1,185,771 + Rru_A0997 0.70 +1.0
1,185,771 + Rru_A0997 0.70 +1.7
1,185,772 - Rru_A0997 0.71 +2.3
1,185,772 - Rru_A0997 0.71 +0.1
1,185,777 + Rru_A0997 0.72 +1.4
1,185,777 + Rru_A0997 0.72 +1.1
1,185,778 - Rru_A0997 0.73 +1.1
1,185,778 - Rru_A0997 0.73 -0.0
1,185,778 - Rru_A0997 0.73 +1.8
1,185,778 - Rru_A0997 0.73 -0.0
1,185,896 + Rru_A0998 0.19 +0.9
1,185,897 - Rru_A0998 0.20 +0.9
1,185,897 - Rru_A0998 0.20 -0.5
1,185,897 - Rru_A0998 0.20 +2.4
1,186,287 - Rru_A0999 0.25 +1.9
1,186,298 + Rru_A0999 0.26 +1.0
1,186,299 - Rru_A0999 0.26 +1.0
1,186,299 - Rru_A0999 0.26 -0.0
1,186,299 - Rru_A0999 0.26 -0.0
1,186,421 + Rru_A0999 0.41 +1.0
1,186,421 + Rru_A0999 0.41 +2.1
1,186,421 + Rru_A0999 0.41 +0.9
1,186,421 + Rru_A0999 0.41 -0.0
1,186,422 - Rru_A0999 0.41 +0.9
1,186,422 - Rru_A0999 0.41 +1.1
1,186,422 - Rru_A0999 0.41 +1.7
1,186,422 - Rru_A0999 0.41 -0.0
1,186,583 + Rru_A0999 0.59 +0.2
1,186,584 - Rru_A0999 0.60 -0.0
1,186,584 - Rru_A0999 0.60 +0.9
1,186,640 + Rru_A0999 0.66 -0.2
1,186,640 + Rru_A0999 0.66 +2.8
1,186,641 - Rru_A0999 0.66 +1.6
1,186,641 - Rru_A0999 0.66 +2.0
1,186,763 + Rru_A0999 0.80 +1.1
1,186,763 + Rru_A0999 0.80 +0.8
1,186,763 + Rru_A0999 0.80 -0.0
1,186,764 - Rru_A0999 0.81 -0.0
1,186,764 - Rru_A0999 0.81 +0.9
1,186,764 - Rru_A0999 0.81 +0.5
1,186,764 - Rru_A0999 0.81 -0.0
1,186,764 - Rru_A0999 0.81 +2.8
1,186,764 - Rru_A0999 0.81 -0.0
1,186,802 + Rru_A0999 0.85 +1.6
1,186,884 + +1.0
1,186,884 + +0.7
1,186,884 + -0.0
1,186,885 - +0.9
1,187,008 + Rru_A1000 0.22 +1.0
1,187,008 + Rru_A1000 0.22 +0.2
1,187,008 + Rru_A1000 0.22 +1.6
1,187,009 - Rru_A1000 0.22 -0.0
1,187,009 - Rru_A1000 0.22 +1.1
1,187,009 - Rru_A1000 0.22 -0.0
1,187,009 - Rru_A1000 0.22 -0.0

Or see this region's nucleotide sequence