Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0921 and Rru_A0922 are separated by 58 nucleotides Rru_A0922 and Rru_A0923 are separated by 360 nucleotides Rru_A0923 and Rru_A0924 are separated by 885 nucleotides
Rru_A0921: Rru_A0921 - DNA-binding protein (NCBI), at 1,095,989 to 1,096,216
_A0921
Rru_A0922: Rru_A0922 - Protein of unknown function DUF1044 (NCBI), at 1,096,275 to 1,096,658
_A0922
Rru_A0923: Rru_A0923 - hypothetical protein (NCBI), at 1,097,019 to 1,097,930
_A0923
Rru_A0924: Rru_A0924 - mannose-6-phosphate isomerase (NCBI), at 1,098,816 to 1,099,739
_A0924
Position (kb)
1097
1098 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1096.296 kb on + strand at 1096.297 kb on - strand at 1096.297 kb on - strand at 1096.297 kb on - strand at 1096.297 kb on - strand at 1096.297 kb on - strand at 1096.526 kb on - strand, within Rru_A0922 at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.674 kb on - strand at 1096.740 kb on - strand at 1096.740 kb on - strand at 1096.753 kb on - strand at 1096.827 kb on - strand at 1096.898 kb on + strand at 1097.021 kb on - strand at 1097.149 kb on + strand, within Rru_A0923 at 1097.149 kb on + strand, within Rru_A0923 at 1097.149 kb on + strand, within Rru_A0923 at 1097.150 kb on - strand, within Rru_A0923 at 1097.335 kb on + strand, within Rru_A0923 at 1097.335 kb on + strand, within Rru_A0923 at 1097.335 kb on + strand, within Rru_A0923 at 1097.336 kb on - strand, within Rru_A0923 at 1097.350 kb on + strand, within Rru_A0923 at 1097.350 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.443 kb on + strand, within Rru_A0923 at 1097.444 kb on - strand, within Rru_A0923 at 1097.444 kb on - strand, within Rru_A0923 at 1097.444 kb on - strand, within Rru_A0923 at 1097.444 kb on - strand, within Rru_A0923 at 1097.602 kb on + strand, within Rru_A0923 at 1097.603 kb on - strand, within Rru_A0923 at 1097.675 kb on + strand, within Rru_A0923 at 1097.714 kb on - strand, within Rru_A0923 at 1097.949 kb on - strand at 1098.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 1,096,296 + -0.0 1,096,297 - +0.8 1,096,297 - +2.4 1,096,297 - +0.4 1,096,297 - +1.0 1,096,297 - +1.2 1,096,526 - Rru_A0922 0.65 +1.4 1,096,674 - +1.5 1,096,674 - +0.9 1,096,674 - +0.9 1,096,674 - -0.0 1,096,674 - +1.8 1,096,674 - +1.8 1,096,674 - +1.8 1,096,740 - +1.6 1,096,740 - -0.0 1,096,753 - +0.5 1,096,827 - +1.4 1,096,898 + +0.5 1,097,021 - -0.0 1,097,149 + Rru_A0923 0.14 -0.0 1,097,149 + Rru_A0923 0.14 +1.4 1,097,149 + Rru_A0923 0.14 +0.9 1,097,150 - Rru_A0923 0.14 +1.2 1,097,335 + Rru_A0923 0.35 +1.5 1,097,335 + Rru_A0923 0.35 +0.6 1,097,335 + Rru_A0923 0.35 +3.3 1,097,336 - Rru_A0923 0.35 +1.6 1,097,350 + Rru_A0923 0.36 +1.3 1,097,350 + Rru_A0923 0.36 +1.3 1,097,443 + Rru_A0923 0.46 +2.5 1,097,443 + Rru_A0923 0.46 +0.8 1,097,443 + Rru_A0923 0.46 -0.0 1,097,443 + Rru_A0923 0.46 +1.9 1,097,443 + Rru_A0923 0.46 -0.0 1,097,443 + Rru_A0923 0.46 -0.0 1,097,444 - Rru_A0923 0.47 +1.3 1,097,444 - Rru_A0923 0.47 -0.0 1,097,444 - Rru_A0923 0.47 +2.4 1,097,444 - Rru_A0923 0.47 +1.2 1,097,602 + Rru_A0923 0.64 -0.0 1,097,603 - Rru_A0923 0.64 +0.3 1,097,675 + Rru_A0923 0.72 +1.3 1,097,714 - Rru_A0923 0.76 +1.2 1,097,949 - +0.6 1,098,092 + -0.0
Or see this region's nucleotide sequence