Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0823 and Rru_A0824 are separated by 193 nucleotides Rru_A0824 and Rru_A0825 are separated by 214 nucleotides Rru_A0825 and Rru_A0826 are separated by 73 nucleotides Rru_A0826 and Rru_A0827 are separated by 4 nucleotides
Rru_A0823: Rru_A0823 - Cupin region (NCBI), at 978,773 to 979,678
_A0823
Rru_A0824: Rru_A0824 - no description, at 979,872 to 980,066
_A0824
Rru_A0825: Rru_A0825 - putative transposase (NCBI), at 980,281 to 980,577
_A0825
Rru_A0826: Rru_A0826 - hypothetical protein (NCBI), at 980,651 to 980,821
_A0826
Rru_A0827: Rru_A0827 - hypothetical protein (NCBI), at 980,826 to 981,182
_A0827
Position (kb) 979
980
981 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 978.890 kb on - strand, within Rru_A0823 at 978.930 kb on - strand, within Rru_A0823 at 978.932 kb on - strand, within Rru_A0823 at 978.932 kb on - strand, within Rru_A0823 at 979.095 kb on - strand, within Rru_A0823 at 979.196 kb on + strand, within Rru_A0823 at 979.197 kb on - strand, within Rru_A0823 at 979.288 kb on + strand, within Rru_A0823 at 979.289 kb on - strand, within Rru_A0823 at 979.417 kb on + strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.702 kb on + strand at 979.702 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.705 kb on - strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.751 kb on - strand at 979.763 kb on + strand at 979.873 kb on + strand at 979.990 kb on + strand, within Rru_A0824 at 979.990 kb on + strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 980.087 kb on + strand at 980.087 kb on + strand at 980.089 kb on + strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.200 kb on + strand at 980.212 kb on + strand at 980.458 kb on + strand, within Rru_A0825 at 980.458 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.525 kb on + strand, within Rru_A0825 at 980.526 kb on - strand, within Rru_A0825 at 980.819 kb on + strand at 980.820 kb on - strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.825 kb on + strand at 980.826 kb on - strand at 980.826 kb on - strand at 980.826 kb on - strand at 980.912 kb on + strand, within Rru_A0827 at 980.913 kb on - strand, within Rru_A0827 at 980.973 kb on - strand, within Rru_A0827 at 980.973 kb on - strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.977 kb on + strand, within Rru_A0827 at 980.978 kb on - strand, within Rru_A0827 at 980.980 kb on + strand, within Rru_A0827 at 980.981 kb on - strand, within Rru_A0827 at 981.014 kb on + strand, within Rru_A0827 at 981.014 kb on + strand, within Rru_A0827 at 981.015 kb on - strand, within Rru_A0827
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 978,890 - Rru_A0823 0.13 +0.8 978,930 - Rru_A0823 0.17 +1.3 978,932 - Rru_A0823 0.18 +0.9 978,932 - Rru_A0823 0.18 -0.0 979,095 - Rru_A0823 0.36 +0.5 979,196 + Rru_A0823 0.47 -0.0 979,197 - Rru_A0823 0.47 -1.0 979,288 + Rru_A0823 0.57 -0.0 979,289 - Rru_A0823 0.57 -0.0 979,417 + Rru_A0823 0.71 +0.5 979,418 - Rru_A0823 0.71 -0.0 979,418 - Rru_A0823 0.71 +1.2 979,499 + Rru_A0823 0.80 -0.0 979,499 + Rru_A0823 0.80 -0.0 979,499 + Rru_A0823 0.80 +2.3 979,499 + Rru_A0823 0.80 -1.0 979,500 - Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 -0.0 979,500 - Rru_A0823 0.80 +1.0 979,500 - Rru_A0823 0.80 +0.7 979,702 + -0.0 979,702 + +1.0 979,704 + +0.9 979,704 + +2.0 979,704 + -2.0 979,705 - -1.0 979,708 + -0.0 979,708 + +0.8 979,708 + -0.0 979,709 - +0.7 979,709 - +1.0 979,709 - +0.2 979,709 - +2.8 979,709 - +1.3 979,709 - -0.0 979,709 - -0.0 979,709 - -0.6 979,709 - +1.5 979,709 - +0.1 979,709 - +1.1 979,709 - +0.7 979,709 - +0.6 979,750 + +1.2 979,750 + -0.0 979,750 + +1.1 979,751 - +0.4 979,763 + +2.4 979,873 + +0.3 979,990 + Rru_A0824 0.61 +0.6 979,990 + Rru_A0824 0.61 +0.4 979,991 - Rru_A0824 0.61 +0.1 979,991 - Rru_A0824 0.61 +0.4 980,087 + +1.2 980,087 + -1.0 980,089 + -0.0 980,178 - -0.0 980,178 - -0.0 980,178 - -0.0 980,178 - -0.4 980,178 - -0.0 980,200 + +1.2 980,212 + -0.0 980,458 + Rru_A0825 0.60 -0.0 980,458 + Rru_A0825 0.60 -0.0 980,470 + Rru_A0825 0.64 -0.0 980,470 + Rru_A0825 0.64 -0.0 980,525 + Rru_A0825 0.82 +1.6 980,526 - Rru_A0825 0.82 +2.5 980,819 + +0.1 980,820 - +0.2 980,825 + -0.0 980,825 + +0.9 980,825 + -0.0 980,825 + +1.0 980,825 + +0.4 980,826 - -0.0 980,826 - +1.0 980,826 - -0.0 980,912 + Rru_A0827 0.24 +4.8 980,913 - Rru_A0827 0.24 +0.5 980,973 - Rru_A0827 0.41 +2.0 980,973 - Rru_A0827 0.41 +1.3 980,977 + Rru_A0827 0.42 -0.0 980,977 + Rru_A0827 0.42 +0.9 980,977 + Rru_A0827 0.42 -0.0 980,978 - Rru_A0827 0.43 -0.0 980,980 + Rru_A0827 0.43 +2.3 980,981 - Rru_A0827 0.43 +1.7 981,014 + Rru_A0827 0.53 +0.5 981,014 + Rru_A0827 0.53 -0.0 981,015 - Rru_A0827 0.53 -0.0
Or see this region's nucleotide sequence