Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0816

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0814 and Rru_A0815 overlap by 4 nucleotidesRru_A0815 and Rru_A0816 are separated by 126 nucleotidesRru_A0816 and Rru_A0817 are separated by 507 nucleotides Rru_A0814: Rru_A0814 - hypothetical protein (NCBI), at 969,912 to 970,436 _A0814 Rru_A0815: Rru_A0815 - hypothetical protein (NCBI), at 970,433 to 970,804 _A0815 Rru_A0816: Rru_A0816 - hypothetical protein (NCBI), at 970,931 to 972,742 _A0816 Rru_A0817: Rru_A0817 - Transposase, mutator type (NCBI), at 973,250 to 973,960 _A0817 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -2 -1 0 1 2 3at 969.933 kb on + strandat 969.933 kb on + strandat 969.934 kb on - strandat 969.941 kb on + strandat 969.991 kb on + strand, within Rru_A0814at 970.076 kb on + strand, within Rru_A0814at 970.076 kb on + strand, within Rru_A0814at 970.077 kb on - strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.078 kb on + strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.079 kb on - strand, within Rru_A0814at 970.191 kb on + strand, within Rru_A0814at 970.218 kb on - strand, within Rru_A0814at 970.258 kb on + strand, within Rru_A0814at 970.259 kb on - strand, within Rru_A0814at 970.276 kb on - strand, within Rru_A0814at 970.276 kb on - strand, within Rru_A0814at 970.294 kb on + strand, within Rru_A0814at 970.295 kb on - strand, within Rru_A0814at 970.372 kb on + strand, within Rru_A0814at 970.373 kb on - strand, within Rru_A0814at 970.393 kb on + strandat 970.393 kb on + strandat 970.393 kb on + strandat 970.394 kb on - strandat 970.394 kb on - strandat 970.396 kb on + strandat 970.747 kb on - strand, within Rru_A0815at 970.840 kb on - strandat 970.933 kb on - strandat 971.124 kb on - strand, within Rru_A0816at 971.151 kb on + strand, within Rru_A0816at 971.151 kb on + strand, within Rru_A0816at 971.152 kb on - strand, within Rru_A0816at 971.580 kb on + strand, within Rru_A0816at 971.580 kb on + strand, within Rru_A0816at 971.580 kb on + strand, within Rru_A0816at 971.644 kb on + strand, within Rru_A0816at 971.644 kb on + strand, within Rru_A0816at 971.644 kb on + strand, within Rru_A0816at 971.644 kb on + strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 971.645 kb on - strand, within Rru_A0816at 972.058 kb on + strand, within Rru_A0816at 972.059 kb on - strand, within Rru_A0816at 972.060 kb on + strand, within Rru_A0816at 972.061 kb on - strand, within Rru_A0816at 972.384 kb on + strand, within Rru_A0816at 972.384 kb on + strand, within Rru_A0816at 972.384 kb on + strand, within Rru_A0816at 972.385 kb on - strand, within Rru_A0816at 972.599 kb on + strandat 972.600 kb on - strandat 972.600 kb on - strandat 972.841 kb on - strandat 972.841 kb on - strandat 973.158 kb on - strandat 973.250 kb on - strandat 973.257 kb on - strandat 973.257 kb on - strandat 973.493 kb on + strand, within Rru_A0817at 973.493 kb on + strand, within Rru_A0817at 973.494 kb on - strand, within Rru_A0817at 973.711 kb on - strand, within Rru_A0817

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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969,933 + +2.8
969,933 + -0.0
969,934 - +1.3
969,941 + +0.3
969,991 + Rru_A0814 0.15 +0.3
970,076 + Rru_A0814 0.31 -0.0
970,076 + Rru_A0814 0.31 +1.9
970,077 - Rru_A0814 0.31 +1.0
970,078 + Rru_A0814 0.32 +1.3
970,078 + Rru_A0814 0.32 +0.8
970,078 + Rru_A0814 0.32 +1.1
970,078 + Rru_A0814 0.32 -1.0
970,078 + Rru_A0814 0.32 +1.5
970,078 + Rru_A0814 0.32 +2.8
970,078 + Rru_A0814 0.32 +1.5
970,079 - Rru_A0814 0.32 +1.4
970,079 - Rru_A0814 0.32 +2.7
970,079 - Rru_A0814 0.32 -0.0
970,079 - Rru_A0814 0.32 +1.0
970,079 - Rru_A0814 0.32 +1.2
970,079 - Rru_A0814 0.32 -0.0
970,191 + Rru_A0814 0.53 -0.0
970,218 - Rru_A0814 0.58 +1.3
970,258 + Rru_A0814 0.66 -0.0
970,259 - Rru_A0814 0.66 -0.0
970,276 - Rru_A0814 0.69 -0.0
970,276 - Rru_A0814 0.69 -0.0
970,294 + Rru_A0814 0.73 -0.0
970,295 - Rru_A0814 0.73 +0.8
970,372 + Rru_A0814 0.88 -2.4
970,373 - Rru_A0814 0.88 +0.7
970,393 + +1.5
970,393 + -0.0
970,393 + +2.0
970,394 - -0.0
970,394 - -0.0
970,396 + +1.7
970,747 - Rru_A0815 0.84 -0.0
970,840 - +2.6
970,933 - +0.8
971,124 - Rru_A0816 0.11 +0.9
971,151 + Rru_A0816 0.12 +1.5
971,151 + Rru_A0816 0.12 +1.1
971,152 - Rru_A0816 0.12 +0.4
971,580 + Rru_A0816 0.36 -0.0
971,580 + Rru_A0816 0.36 +1.3
971,580 + Rru_A0816 0.36 +1.1
971,644 + Rru_A0816 0.39 +2.4
971,644 + Rru_A0816 0.39 +0.8
971,644 + Rru_A0816 0.39 +0.8
971,644 + Rru_A0816 0.39 +1.5
971,645 - Rru_A0816 0.39 -0.0
971,645 - Rru_A0816 0.39 +1.0
971,645 - Rru_A0816 0.39 +2.5
971,645 - Rru_A0816 0.39 +1.0
971,645 - Rru_A0816 0.39 -0.0
971,645 - Rru_A0816 0.39 -0.0
971,645 - Rru_A0816 0.39 -0.0
972,058 + Rru_A0816 0.62 -0.0
972,059 - Rru_A0816 0.62 -0.0
972,060 + Rru_A0816 0.62 +1.7
972,061 - Rru_A0816 0.62 +1.3
972,384 + Rru_A0816 0.80 +0.8
972,384 + Rru_A0816 0.80 +2.1
972,384 + Rru_A0816 0.80 -0.0
972,385 - Rru_A0816 0.80 -0.0
972,599 + -0.0
972,600 - +1.1
972,600 - +2.5
972,841 - +1.1
972,841 - -0.0
973,158 - +1.5
973,250 - +0.2
973,257 - +2.1
973,257 - -0.0
973,493 + Rru_A0817 0.34 -1.0
973,493 + Rru_A0817 0.34 +1.2
973,494 - Rru_A0817 0.34 +0.7
973,711 - Rru_A0817 0.65 +0.7

Or see this region's nucleotide sequence