Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0805 and Rru_A0806 are separated by 3 nucleotides Rru_A0806 and Rru_A0807 overlap by 1 nucleotides Rru_A0807 and Rru_A0808 overlap by 4 nucleotides
Rru_A0805: Rru_A0805 - conjugal transfer protein (NCBI), at 960,586 to 961,362
_A0805
Rru_A0806: Rru_A0806 - conjugal transfer protein (NCBI), at 961,366 to 961,635
_A0806
Rru_A0807: Rru_A0807 - Conjugal transfer protein TrbC (NCBI), at 961,635 to 961,967
_A0807
Rru_A0808: Rru_A0808 - type II secretion system protein E (NCBI), at 961,964 to 962,944
_A0808
Position (kb)
961
962 Strain fitness (log2 ratio)
-1
0
1
2 at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.803 kb on - strand, within Rru_A0805 at 960.806 kb on + strand, within Rru_A0805 at 960.807 kb on - strand, within Rru_A0805 at 960.944 kb on + strand, within Rru_A0805 at 961.357 kb on + strand at 961.357 kb on + strand at 961.357 kb on + strand at 961.358 kb on - strand at 961.379 kb on + strand at 961.379 kb on + strand at 961.379 kb on + strand at 961.380 kb on - strand at 961.380 kb on - strand at 961.723 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.880 kb on - strand, within Rru_A0807 at 961.916 kb on + strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 961.917 kb on - strand, within Rru_A0807 at 962.005 kb on - strand at 962.050 kb on + strand at 962.262 kb on - strand, within Rru_A0808 at 962.406 kb on - strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.491 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.562 kb on + strand, within Rru_A0808 at 962.563 kb on - strand, within Rru_A0808 at 962.563 kb on - strand, within Rru_A0808 at 962.944 kb on + strand at 962.945 kb on - strand at 962.945 kb on - strand at 962.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 960,803 - Rru_A0805 0.28 +1.0 960,803 - Rru_A0805 0.28 +1.2 960,803 - Rru_A0805 0.28 +1.7 960,806 + Rru_A0805 0.28 -0.0 960,807 - Rru_A0805 0.28 +1.0 960,944 + Rru_A0805 0.46 -0.0 961,357 + -0.0 961,357 + +0.4 961,357 + +0.7 961,358 - -0.0 961,379 + +1.0 961,379 + +1.2 961,379 + +2.0 961,380 - +2.4 961,380 - -1.0 961,723 - Rru_A0807 0.26 +0.8 961,880 - Rru_A0807 0.74 +1.3 961,880 - Rru_A0807 0.74 +0.9 961,880 - Rru_A0807 0.74 -0.0 961,916 + Rru_A0807 0.84 +1.4 961,917 - Rru_A0807 0.85 -0.0 961,917 - Rru_A0807 0.85 +1.2 961,917 - Rru_A0807 0.85 -0.0 962,005 - +2.0 962,050 + +1.1 962,262 - Rru_A0808 0.30 +1.3 962,406 - Rru_A0808 0.45 +0.7 962,491 + Rru_A0808 0.54 +1.4 962,491 + Rru_A0808 0.54 +1.5 962,491 + Rru_A0808 0.54 +1.8 962,562 + Rru_A0808 0.61 -0.0 962,562 + Rru_A0808 0.61 +1.3 962,562 + Rru_A0808 0.61 +0.8 962,563 - Rru_A0808 0.61 -0.0 962,563 - Rru_A0808 0.61 -0.0 962,944 + +1.2 962,945 - +1.4 962,945 - -0.0 962,945 - -0.0
Or see this region's nucleotide sequence