Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0795

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0794 and Rru_A0795 are separated by 12 nucleotidesRru_A0795 and Rru_A0796 are separated by 39 nucleotides Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Rru_A0795: Rru_A0795 - Nitrogenase iron protein (NCBI), at 949,402 to 950,277 _A0795 Rru_A0796: Rru_A0796 - Radical SAM (NCBI), at 950,317 to 951,312 _A0796 Position (kb) 949 950 951Strain fitness (log2 ratio) -1 0 1 2 3at 948.428 kb on + strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.503 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.579 kb on - strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.841 kb on + strand, within Rru_A0794at 948.842 kb on - strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.556 kb on + strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.764 kb on - strand, within Rru_A0795at 949.799 kb on + strand, within Rru_A0795at 949.800 kb on - strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.205 kb on + strandat 950.206 kb on - strandat 950.246 kb on + strandat 950.246 kb on + strandat 950.357 kb on + strandat 950.428 kb on - strand, within Rru_A0796at 950.509 kb on - strand, within Rru_A0796

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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948,428 + Rru_A0794 0.37 -0.0
948,428 + Rru_A0794 0.37 -0.0
948,429 - Rru_A0794 0.37 +2.1
948,429 - Rru_A0794 0.37 +1.8
948,429 - Rru_A0794 0.37 +1.0
948,503 + Rru_A0794 0.42 +1.5
948,563 + Rru_A0794 0.46 -0.0
948,563 + Rru_A0794 0.46 +0.8
948,564 - Rru_A0794 0.46 -0.0
948,564 - Rru_A0794 0.46 -0.0
948,579 - Rru_A0794 0.47 +0.8
948,650 + Rru_A0794 0.52 +1.0
948,650 + Rru_A0794 0.52 +0.7
948,651 - Rru_A0794 0.52 +1.5
948,651 - Rru_A0794 0.52 -0.0
948,841 + Rru_A0794 0.64 +1.6
948,842 - Rru_A0794 0.64 +0.7
949,001 + Rru_A0794 0.75 +1.8
949,001 + Rru_A0794 0.75 +0.4
949,095 + Rru_A0794 0.81 +1.5
949,095 + Rru_A0794 0.81 +1.0
949,096 - Rru_A0794 0.81 -0.0
949,096 - Rru_A0794 0.81 -1.0
949,096 - Rru_A0794 0.81 +2.3
949,096 - Rru_A0794 0.81 -0.0
949,096 - Rru_A0794 0.81 -0.0
949,097 + Rru_A0794 0.81 -0.0
949,097 + Rru_A0794 0.81 +3.1
949,098 - Rru_A0794 0.81 +1.3
949,098 - Rru_A0794 0.81 +1.6
949,525 - Rru_A0795 0.14 +3.3
949,525 - Rru_A0795 0.14 +1.6
949,525 - Rru_A0795 0.14 -1.0
949,556 + Rru_A0795 0.18 -0.0
949,557 - Rru_A0795 0.18 +1.3
949,557 - Rru_A0795 0.18 -0.3
949,646 + Rru_A0795 0.28 +1.1
949,646 + Rru_A0795 0.28 -0.0
949,646 + Rru_A0795 0.28 +0.2
949,646 + Rru_A0795 0.28 -0.0
949,646 + Rru_A0795 0.28 +2.0
949,646 + Rru_A0795 0.28 +1.5
949,763 + Rru_A0795 0.41 +1.0
949,763 + Rru_A0795 0.41 +1.4
949,763 + Rru_A0795 0.41 +1.1
949,764 - Rru_A0795 0.41 +0.6
949,799 + Rru_A0795 0.45 +1.4
949,800 - Rru_A0795 0.45 -1.0
949,913 + Rru_A0795 0.58 +1.1
949,913 + Rru_A0795 0.58 +1.6
949,914 - Rru_A0795 0.58 -0.3
949,914 - Rru_A0795 0.58 -0.0
949,914 - Rru_A0795 0.58 +2.1
950,027 + Rru_A0795 0.71 +0.7
950,027 + Rru_A0795 0.71 -0.0
950,027 + Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +1.5
950,028 - Rru_A0795 0.71 +1.8
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +0.7
950,028 - Rru_A0795 0.71 +1.4
950,028 - Rru_A0795 0.71 +1.0
950,028 - Rru_A0795 0.71 +1.2
950,028 - Rru_A0795 0.71 +1.0
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +0.1
950,111 + Rru_A0795 0.81 -0.0
950,111 + Rru_A0795 0.81 +0.9
950,111 + Rru_A0795 0.81 +1.3
950,111 + Rru_A0795 0.81 +0.4
950,111 + Rru_A0795 0.81 +1.4
950,111 + Rru_A0795 0.81 +1.8
950,112 - Rru_A0795 0.81 +1.3
950,112 - Rru_A0795 0.81 -0.0
950,178 - Rru_A0795 0.89 +2.0
950,178 - Rru_A0795 0.89 -0.0
950,205 + +1.1
950,206 - -0.0
950,246 + -1.0
950,246 + +1.6
950,357 + -0.0
950,428 - Rru_A0796 0.11 -0.0
950,509 - Rru_A0796 0.19 +1.6

Or see this region's nucleotide sequence