Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0793

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0792 and Rru_A0793 are separated by 219 nucleotidesRru_A0793 and Rru_A0794 are separated by 8 nucleotides Rru_A0792: Rru_A0792 - Serine O-acetyltransferase (NCBI), at 945,359 to 946,225 _A0792 Rru_A0793: Rru_A0793 - Nitrogenase (NCBI), at 946,445 to 947,845 _A0793 Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Position (kb) 946 947 948Strain fitness (log2 ratio) -1 0 1 2 3 4at 945.533 kb on - strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.856 kb on - strand, within Rru_A0792at 946.104 kb on + strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.252 kb on - strandat 946.358 kb on + strandat 946.359 kb on - strandat 946.359 kb on - strandat 946.371 kb on + strandat 946.387 kb on + strandat 946.473 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.516 kb on - strandat 946.539 kb on + strandat 946.539 kb on + strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.726 kb on - strand, within Rru_A0793at 946.738 kb on + strand, within Rru_A0793at 946.834 kb on + strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.836 kb on + strand, within Rru_A0793at 946.837 kb on - strand, within Rru_A0793at 946.884 kb on + strand, within Rru_A0793at 946.885 kb on - strand, within Rru_A0793at 946.893 kb on + strand, within Rru_A0793at 946.894 kb on - strand, within Rru_A0793at 946.917 kb on + strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.926 kb on + strand, within Rru_A0793at 946.927 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.122 kb on + strand, within Rru_A0793at 947.185 kb on + strand, within Rru_A0793at 947.287 kb on + strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.483 kb on - strand, within Rru_A0793at 947.644 kb on + strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.755 kb on + strandat 947.755 kb on + strandat 947.755 kb on + strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.757 kb on + strandat 947.757 kb on + strandat 947.758 kb on - strandat 947.758 kb on - strandat 947.758 kb on - strandat 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.149 kb on + strand, within Rru_A0794at 948.150 kb on - strand, within Rru_A0794at 948.200 kb on + strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.251 kb on + strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.333 kb on - strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.503 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.579 kb on - strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.841 kb on + strand, within Rru_A0794at 948.842 kb on - strand, within Rru_A0794

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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945,533 - Rru_A0792 0.20 -0.0
945,855 + Rru_A0792 0.57 +1.0
945,855 + Rru_A0792 0.57 -0.0
945,856 - Rru_A0792 0.57 +2.2
946,104 + Rru_A0792 0.86 -0.0
946,105 - Rru_A0792 0.86 +0.2
946,105 - Rru_A0792 0.86 +0.2
946,105 - Rru_A0792 0.86 -0.0
946,252 - +2.0
946,358 + -0.6
946,359 - +1.0
946,359 - +1.3
946,371 + +1.6
946,387 + +0.7
946,473 + -0.0
946,515 + +1.6
946,515 + +0.9
946,515 + +3.6
946,516 - +1.0
946,539 + -0.0
946,539 + -0.0
946,540 - -0.0
946,540 - -0.5
946,540 - +1.2
946,671 + Rru_A0793 0.16 +0.2
946,671 + Rru_A0793 0.16 +1.2
946,671 + Rru_A0793 0.16 -0.0
946,671 + Rru_A0793 0.16 +1.0
946,671 + Rru_A0793 0.16 +1.7
946,672 - Rru_A0793 0.16 -0.6
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 +1.1
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 +2.0
946,726 - Rru_A0793 0.20 +0.9
946,738 + Rru_A0793 0.21 +1.1
946,834 + Rru_A0793 0.28 +0.8
946,835 - Rru_A0793 0.28 +1.2
946,835 - Rru_A0793 0.28 -0.0
946,836 + Rru_A0793 0.28 +1.0
946,837 - Rru_A0793 0.28 +0.8
946,884 + Rru_A0793 0.31 -0.6
946,885 - Rru_A0793 0.31 -0.0
946,893 + Rru_A0793 0.32 +1.4
946,894 - Rru_A0793 0.32 +1.9
946,917 + Rru_A0793 0.34 +0.5
946,918 - Rru_A0793 0.34 +1.0
946,918 - Rru_A0793 0.34 -1.0
946,918 - Rru_A0793 0.34 +0.9
946,926 + Rru_A0793 0.34 +1.0
946,927 - Rru_A0793 0.34 +4.0
947,065 - Rru_A0793 0.44 +3.0
947,065 - Rru_A0793 0.44 -0.0
947,122 + Rru_A0793 0.48 +1.1
947,185 + Rru_A0793 0.53 +1.6
947,287 + Rru_A0793 0.60 +1.5
947,288 - Rru_A0793 0.60 +2.4
947,288 - Rru_A0793 0.60 -0.0
947,381 - Rru_A0793 0.67 +2.0
947,381 - Rru_A0793 0.67 -0.0
947,381 - Rru_A0793 0.67 +0.8
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 +1.2
947,410 - Rru_A0793 0.69 +0.8
947,483 - Rru_A0793 0.74 -0.0
947,644 + Rru_A0793 0.86 +0.4
947,645 - Rru_A0793 0.86 +1.1
947,645 - Rru_A0793 0.86 +1.0
947,646 + Rru_A0793 0.86 +1.2
947,646 + Rru_A0793 0.86 +1.4
947,647 - Rru_A0793 0.86 -0.0
947,647 - Rru_A0793 0.86 +1.0
947,647 - Rru_A0793 0.86 +0.6
947,755 + +1.0
947,755 + +1.4
947,755 + -0.0
947,756 - +1.0
947,756 - +1.4
947,756 - +2.1
947,756 - -0.0
947,757 + -0.0
947,757 + -1.0
947,758 - +1.3
947,758 - +1.0
947,758 - +1.0
948,039 + Rru_A0794 0.12 +1.0
948,039 + Rru_A0794 0.12 +0.7
948,039 + Rru_A0794 0.12 +1.4
948,149 + Rru_A0794 0.19 -0.0
948,150 - Rru_A0794 0.19 -1.0
948,200 + Rru_A0794 0.23 -0.0
948,201 - Rru_A0794 0.23 +1.0
948,201 - Rru_A0794 0.23 -0.0
948,251 + Rru_A0794 0.26 +1.7
948,252 - Rru_A0794 0.26 -0.2
948,252 - Rru_A0794 0.26 +1.8
948,332 + Rru_A0794 0.31 -0.0
948,332 + Rru_A0794 0.31 +1.7
948,333 - Rru_A0794 0.31 +0.6
948,428 + Rru_A0794 0.37 -0.0
948,428 + Rru_A0794 0.37 -0.0
948,429 - Rru_A0794 0.37 +2.1
948,429 - Rru_A0794 0.37 +1.8
948,429 - Rru_A0794 0.37 +1.0
948,503 + Rru_A0794 0.42 +1.5
948,563 + Rru_A0794 0.46 -0.0
948,563 + Rru_A0794 0.46 +0.8
948,564 - Rru_A0794 0.46 -0.0
948,564 - Rru_A0794 0.46 -0.0
948,579 - Rru_A0794 0.47 +0.8
948,650 + Rru_A0794 0.52 +1.0
948,650 + Rru_A0794 0.52 +0.7
948,651 - Rru_A0794 0.52 +1.5
948,651 - Rru_A0794 0.52 -0.0
948,841 + Rru_A0794 0.64 +1.6
948,842 - Rru_A0794 0.64 +0.7

Or see this region's nucleotide sequence