Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0792

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0791 and Rru_A0792 are separated by 309 nucleotidesRru_A0792 and Rru_A0793 are separated by 219 nucleotides Rru_A0791: Rru_A0791 - NLPA lipoprotein (NCBI), at 944,261 to 945,049 _A0791 Rru_A0792: Rru_A0792 - Serine O-acetyltransferase (NCBI), at 945,359 to 946,225 _A0792 Rru_A0793: Rru_A0793 - Nitrogenase (NCBI), at 946,445 to 947,845 _A0793 Position (kb) 945 946 947Strain fitness (log2 ratio) -1 0 1 2 3 4at 944.366 kb on + strand, within Rru_A0791at 944.367 kb on - strand, within Rru_A0791at 944.367 kb on - strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.385 kb on - strand, within Rru_A0791at 944.447 kb on + strand, within Rru_A0791at 944.448 kb on - strand, within Rru_A0791at 944.513 kb on + strand, within Rru_A0791at 944.514 kb on - strand, within Rru_A0791at 944.543 kb on + strand, within Rru_A0791at 944.543 kb on + strand, within Rru_A0791at 944.544 kb on - strand, within Rru_A0791at 944.945 kb on - strand, within Rru_A0791at 944.969 kb on + strand, within Rru_A0791at 944.970 kb on - strand, within Rru_A0791at 945.367 kb on + strandat 945.367 kb on + strandat 945.367 kb on + strandat 945.367 kb on + strandat 945.368 kb on - strandat 945.369 kb on + strandat 945.369 kb on + strandat 945.369 kb on + strandat 945.384 kb on + strandat 945.384 kb on + strandat 945.385 kb on - strandat 945.385 kb on - strandat 945.385 kb on - strandat 945.533 kb on - strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.855 kb on + strand, within Rru_A0792at 945.856 kb on - strand, within Rru_A0792at 946.104 kb on + strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.105 kb on - strand, within Rru_A0792at 946.252 kb on - strandat 946.358 kb on + strandat 946.359 kb on - strandat 946.359 kb on - strandat 946.371 kb on + strandat 946.387 kb on + strandat 946.473 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.515 kb on + strandat 946.516 kb on - strandat 946.539 kb on + strandat 946.539 kb on + strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.540 kb on - strandat 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.671 kb on + strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.672 kb on - strand, within Rru_A0793at 946.726 kb on - strand, within Rru_A0793at 946.738 kb on + strand, within Rru_A0793at 946.834 kb on + strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.835 kb on - strand, within Rru_A0793at 946.836 kb on + strand, within Rru_A0793at 946.837 kb on - strand, within Rru_A0793at 946.884 kb on + strand, within Rru_A0793at 946.885 kb on - strand, within Rru_A0793at 946.893 kb on + strand, within Rru_A0793at 946.894 kb on - strand, within Rru_A0793at 946.917 kb on + strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.926 kb on + strand, within Rru_A0793at 946.927 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.122 kb on + strand, within Rru_A0793at 947.185 kb on + strand, within Rru_A0793

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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944,366 + Rru_A0791 0.13 +0.8
944,367 - Rru_A0791 0.13 +0.6
944,367 - Rru_A0791 0.13 +0.9
944,384 + Rru_A0791 0.16 -0.0
944,384 + Rru_A0791 0.16 +1.5
944,384 + Rru_A0791 0.16 -0.0
944,384 + Rru_A0791 0.16 +1.3
944,384 + Rru_A0791 0.16 +0.1
944,384 + Rru_A0791 0.16 +1.2
944,385 - Rru_A0791 0.16 +0.5
944,447 + Rru_A0791 0.24 -0.0
944,448 - Rru_A0791 0.24 -0.0
944,513 + Rru_A0791 0.32 -0.0
944,514 - Rru_A0791 0.32 +2.3
944,543 + Rru_A0791 0.36 +1.5
944,543 + Rru_A0791 0.36 +0.2
944,544 - Rru_A0791 0.36 +0.5
944,945 - Rru_A0791 0.87 -0.0
944,969 + Rru_A0791 0.90 +2.8
944,970 - Rru_A0791 0.90 +0.6
945,367 + +0.4
945,367 + +0.9
945,367 + +0.6
945,367 + +1.4
945,368 - +3.6
945,369 + +0.9
945,369 + +1.5
945,369 + +1.3
945,384 + +1.6
945,384 + -0.8
945,385 - -0.0
945,385 - -0.2
945,385 - +1.4
945,533 - Rru_A0792 0.20 -0.0
945,855 + Rru_A0792 0.57 +1.0
945,855 + Rru_A0792 0.57 -0.0
945,856 - Rru_A0792 0.57 +2.2
946,104 + Rru_A0792 0.86 -0.0
946,105 - Rru_A0792 0.86 +0.2
946,105 - Rru_A0792 0.86 +0.2
946,105 - Rru_A0792 0.86 -0.0
946,252 - +2.0
946,358 + -0.6
946,359 - +1.0
946,359 - +1.3
946,371 + +1.6
946,387 + +0.7
946,473 + -0.0
946,515 + +1.6
946,515 + +0.9
946,515 + +3.6
946,516 - +1.0
946,539 + -0.0
946,539 + -0.0
946,540 - -0.0
946,540 - -0.5
946,540 - +1.2
946,671 + Rru_A0793 0.16 +0.2
946,671 + Rru_A0793 0.16 +1.2
946,671 + Rru_A0793 0.16 -0.0
946,671 + Rru_A0793 0.16 +1.0
946,671 + Rru_A0793 0.16 +1.7
946,672 - Rru_A0793 0.16 -0.6
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 +1.1
946,672 - Rru_A0793 0.16 -0.0
946,672 - Rru_A0793 0.16 +2.0
946,726 - Rru_A0793 0.20 +0.9
946,738 + Rru_A0793 0.21 +1.1
946,834 + Rru_A0793 0.28 +0.8
946,835 - Rru_A0793 0.28 +1.2
946,835 - Rru_A0793 0.28 -0.0
946,836 + Rru_A0793 0.28 +1.0
946,837 - Rru_A0793 0.28 +0.8
946,884 + Rru_A0793 0.31 -0.6
946,885 - Rru_A0793 0.31 -0.0
946,893 + Rru_A0793 0.32 +1.4
946,894 - Rru_A0793 0.32 +1.9
946,917 + Rru_A0793 0.34 +0.5
946,918 - Rru_A0793 0.34 +1.0
946,918 - Rru_A0793 0.34 -1.0
946,918 - Rru_A0793 0.34 +0.9
946,926 + Rru_A0793 0.34 +1.0
946,927 - Rru_A0793 0.34 +4.0
947,065 - Rru_A0793 0.44 +3.0
947,065 - Rru_A0793 0.44 -0.0
947,122 + Rru_A0793 0.48 +1.1
947,185 + Rru_A0793 0.53 +1.6

Or see this region's nucleotide sequence