Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0786

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0785 and Rru_A0786 are separated by 176 nucleotidesRru_A0786 and Rru_A0787 overlap by 4 nucleotides Rru_A0785: Rru_A0785 - Transcriptional Regulator, LysR family (NCBI), at 937,314 to 938,249 _A0785 Rru_A0786: Rru_A0786 - Cystathionine gamma-synthase (NCBI), at 938,426 to 939,598 _A0786 Rru_A0787: Rru_A0787 - cysteine synthase (NCBI), at 939,595 to 940,959 _A0787 Position (kb) 938 939 940Strain fitness (log2 ratio) -1 0 1 2at 937.433 kb on - strand, within Rru_A0785at 937.433 kb on - strand, within Rru_A0785at 937.481 kb on + strand, within Rru_A0785at 937.867 kb on + strand, within Rru_A0785at 937.868 kb on - strand, within Rru_A0785at 938.164 kb on - strandat 938.264 kb on + strandat 938.265 kb on - strandat 938.305 kb on - strandat 938.305 kb on - strandat 938.315 kb on + strandat 938.316 kb on - strandat 938.748 kb on + strand, within Rru_A0786at 938.982 kb on + strand, within Rru_A0786at 938.982 kb on + strand, within Rru_A0786at 938.983 kb on - strand, within Rru_A0786at 938.983 kb on - strand, within Rru_A0786at 938.983 kb on - strand, within Rru_A0786at 938.983 kb on - strand, within Rru_A0786at 939.216 kb on + strand, within Rru_A0786at 939.216 kb on + strand, within Rru_A0786at 939.216 kb on + strand, within Rru_A0786at 939.216 kb on + strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.217 kb on - strand, within Rru_A0786at 939.279 kb on + strand, within Rru_A0786at 939.279 kb on + strand, within Rru_A0786at 939.280 kb on - strand, within Rru_A0786at 939.301 kb on + strand, within Rru_A0786at 939.302 kb on - strand, within Rru_A0786at 939.302 kb on - strand, within Rru_A0786at 939.302 kb on - strand, within Rru_A0786at 939.367 kb on - strand, within Rru_A0786at 939.441 kb on + strand, within Rru_A0786at 939.442 kb on - strand, within Rru_A0786at 939.442 kb on - strand, within Rru_A0786at 939.454 kb on + strand, within Rru_A0786at 939.454 kb on + strand, within Rru_A0786at 939.454 kb on + strand, within Rru_A0786at 939.454 kb on + strand, within Rru_A0786at 939.495 kb on + strandat 939.495 kb on + strandat 939.495 kb on + strandat 939.496 kb on - strandat 939.496 kb on - strandat 939.614 kb on - strandat 939.614 kb on - strandat 939.614 kb on - strandat 939.614 kb on - strandat 940.029 kb on + strand, within Rru_A0787at 940.032 kb on - strand, within Rru_A0787at 940.032 kb on - strand, within Rru_A0787at 940.043 kb on - strand, within Rru_A0787at 940.047 kb on - strand, within Rru_A0787at 940.047 kb on - strand, within Rru_A0787at 940.050 kb on + strand, within Rru_A0787at 940.050 kb on + strand, within Rru_A0787at 940.050 kb on + strand, within Rru_A0787at 940.050 kb on + strand, within Rru_A0787at 940.051 kb on - strand, within Rru_A0787at 940.109 kb on + strand, within Rru_A0787at 940.215 kb on + strand, within Rru_A0787at 940.215 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.323 kb on - strand, within Rru_A0787at 940.581 kb on - strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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937,433 - Rru_A0785 0.13 +0.8
937,433 - Rru_A0785 0.13 +1.5
937,481 + Rru_A0785 0.18 +0.6
937,867 + Rru_A0785 0.59 -0.0
937,868 - Rru_A0785 0.59 +1.0
938,164 - -0.0
938,264 + +1.0
938,265 - -0.6
938,305 - -0.0
938,305 - +0.6
938,315 + -0.0
938,316 - -1.0
938,748 + Rru_A0786 0.27 +1.0
938,982 + Rru_A0786 0.47 +2.2
938,982 + Rru_A0786 0.47 +2.0
938,983 - Rru_A0786 0.47 -0.0
938,983 - Rru_A0786 0.47 +0.8
938,983 - Rru_A0786 0.47 +1.2
938,983 - Rru_A0786 0.47 +1.0
939,216 + Rru_A0786 0.67 -0.0
939,216 + Rru_A0786 0.67 -0.0
939,216 + Rru_A0786 0.67 -0.0
939,216 + Rru_A0786 0.67 -0.0
939,217 - Rru_A0786 0.67 +1.4
939,217 - Rru_A0786 0.67 -0.0
939,217 - Rru_A0786 0.67 +1.2
939,217 - Rru_A0786 0.67 +1.4
939,217 - Rru_A0786 0.67 +1.2
939,217 - Rru_A0786 0.67 +1.4
939,217 - Rru_A0786 0.67 +0.7
939,217 - Rru_A0786 0.67 -0.0
939,279 + Rru_A0786 0.73 -0.0
939,279 + Rru_A0786 0.73 +1.1
939,280 - Rru_A0786 0.73 -0.0
939,301 + Rru_A0786 0.75 +1.8
939,302 - Rru_A0786 0.75 +0.9
939,302 - Rru_A0786 0.75 +1.7
939,302 - Rru_A0786 0.75 -0.0
939,367 - Rru_A0786 0.80 -1.0
939,441 + Rru_A0786 0.87 +2.3
939,442 - Rru_A0786 0.87 +0.7
939,442 - Rru_A0786 0.87 +1.9
939,454 + Rru_A0786 0.88 -1.0
939,454 + Rru_A0786 0.88 +2.7
939,454 + Rru_A0786 0.88 -0.0
939,454 + Rru_A0786 0.88 +0.0
939,495 + +1.0
939,495 + +0.8
939,495 + -0.0
939,496 - -0.0
939,496 - -0.6
939,614 - +1.2
939,614 - -0.0
939,614 - +0.5
939,614 - -0.0
940,029 + Rru_A0787 0.32 +1.2
940,032 - Rru_A0787 0.32 +0.5
940,032 - Rru_A0787 0.32 +0.6
940,043 - Rru_A0787 0.33 -0.0
940,047 - Rru_A0787 0.33 -0.0
940,047 - Rru_A0787 0.33 +0.3
940,050 + Rru_A0787 0.33 +1.2
940,050 + Rru_A0787 0.33 +1.0
940,050 + Rru_A0787 0.33 +1.6
940,050 + Rru_A0787 0.33 +1.3
940,051 - Rru_A0787 0.33 -0.3
940,109 + Rru_A0787 0.38 -0.0
940,215 + Rru_A0787 0.45 +0.7
940,215 + Rru_A0787 0.45 +1.0
940,217 + Rru_A0787 0.46 +1.5
940,217 + Rru_A0787 0.46 +1.7
940,217 + Rru_A0787 0.46 +1.4
940,217 + Rru_A0787 0.46 +1.5
940,217 + Rru_A0787 0.46 -0.0
940,217 + Rru_A0787 0.46 -0.0
940,218 - Rru_A0787 0.46 +1.1
940,218 - Rru_A0787 0.46 +0.5
940,218 - Rru_A0787 0.46 +1.3
940,322 + Rru_A0787 0.53 -0.0
940,322 + Rru_A0787 0.53 -0.0
940,322 + Rru_A0787 0.53 +2.3
940,322 + Rru_A0787 0.53 -0.0
940,322 + Rru_A0787 0.53 +0.8
940,323 - Rru_A0787 0.53 -0.0
940,581 - Rru_A0787 0.72 +2.0
940,583 + Rru_A0787 0.72 -0.0
940,583 + Rru_A0787 0.72 +0.8
940,583 + Rru_A0787 0.72 -0.0

Or see this region's nucleotide sequence