Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0777 and Rru_A0778 overlap by 4 nucleotides Rru_A0778 and Rru_A0779 are separated by 145 nucleotides
Rru_A0777: Rru_A0777 - D-lactate dehydrogenase (cytochrome) (NCBI), at 928,695 to 930,143
_A0777
Rru_A0778: Rru_A0778 - Lipoprotein YaeC (NCBI), at 930,140 to 930,946
_A0778
Rru_A0779: Rru_A0779 - extracellular solute-binding protein, family 3 (NCBI), at 931,092 to 932,144
_A0779
Position (kb) 930
931 Strain fitness (log2 ratio) -1
0
1
2 at 929.526 kb on - strand, within Rru_A0777 at 929.849 kb on + strand, within Rru_A0777 at 930.225 kb on + strand, within Rru_A0778 at 930.408 kb on - strand, within Rru_A0778 at 930.408 kb on - strand, within Rru_A0778 at 930.437 kb on + strand, within Rru_A0778 at 930.437 kb on + strand, within Rru_A0778 at 930.438 kb on - strand, within Rru_A0778 at 930.438 kb on - strand, within Rru_A0778 at 930.485 kb on + strand, within Rru_A0778 at 930.534 kb on + strand, within Rru_A0778 at 930.535 kb on - strand, within Rru_A0778 at 930.535 kb on - strand, within Rru_A0778 at 930.743 kb on + strand, within Rru_A0778 at 930.744 kb on - strand, within Rru_A0778 at 930.744 kb on - strand, within Rru_A0778 at 930.809 kb on + strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.810 kb on - strand, within Rru_A0778 at 930.928 kb on + strand at 930.928 kb on + strand at 930.928 kb on + strand at 930.929 kb on - strand at 931.006 kb on + strand at 931.034 kb on + strand at 931.419 kb on - strand, within Rru_A0779 at 931.625 kb on + strand, within Rru_A0779 at 931.626 kb on - strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.764 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.860 kb on + strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.861 kb on - strand, within Rru_A0779 at 931.928 kb on + strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779 at 931.929 kb on - strand, within Rru_A0779
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 929,526 - Rru_A0777 0.57 +0.2 929,849 + Rru_A0777 0.80 +1.0 930,225 + Rru_A0778 0.11 -0.0 930,408 - Rru_A0778 0.33 -0.0 930,408 - Rru_A0778 0.33 -0.0 930,437 + Rru_A0778 0.37 -0.0 930,437 + Rru_A0778 0.37 -0.0 930,438 - Rru_A0778 0.37 +2.3 930,438 - Rru_A0778 0.37 +1.2 930,485 + Rru_A0778 0.43 +1.0 930,534 + Rru_A0778 0.49 +0.4 930,535 - Rru_A0778 0.49 +2.0 930,535 - Rru_A0778 0.49 +0.7 930,743 + Rru_A0778 0.75 -1.0 930,744 - Rru_A0778 0.75 +1.5 930,744 - Rru_A0778 0.75 -0.0 930,809 + Rru_A0778 0.83 -1.0 930,810 - Rru_A0778 0.83 +1.9 930,810 - Rru_A0778 0.83 +0.6 930,810 - Rru_A0778 0.83 +1.0 930,928 + +1.3 930,928 + +2.3 930,928 + +1.2 930,929 - +1.3 931,006 + +1.0 931,034 + +2.6 931,419 - Rru_A0779 0.31 -0.0 931,625 + Rru_A0779 0.51 -1.0 931,626 - Rru_A0779 0.51 +1.0 931,764 + Rru_A0779 0.64 +0.6 931,764 + Rru_A0779 0.64 -1.6 931,764 + Rru_A0779 0.64 +1.2 931,860 + Rru_A0779 0.73 +2.0 931,860 + Rru_A0779 0.73 +2.0 931,860 + Rru_A0779 0.73 -0.0 931,861 - Rru_A0779 0.73 -0.0 931,861 - Rru_A0779 0.73 +1.2 931,928 + Rru_A0779 0.79 +1.1 931,929 - Rru_A0779 0.79 +2.3 931,929 - Rru_A0779 0.79 +1.3
Or see this region's nucleotide sequence