Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0766 and Rru_A0767 are separated by 98 nucleotides Rru_A0767 and Rru_A0768 overlap by 4 nucleotides
Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148
_A0766
Rru_A0767: Rru_A0767 - ABC transporter component (NCBI), at 904,247 to 905,320
_A0767
Rru_A0768: Rru_A0768 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 905,317 to 906,993
_A0768
Position (kb) 904
905
906 Strain fitness (log2 ratio) -1
0
1
2
3 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.292 kb on + strand, within Rru_A0766 at 903.293 kb on - strand, within Rru_A0766 at 903.305 kb on - strand, within Rru_A0766 at 903.532 kb on + strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.642 kb on - strand, within Rru_A0766 at 903.726 kb on + strand, within Rru_A0766 at 903.727 kb on - strand, within Rru_A0766 at 903.834 kb on - strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.899 kb on - strand, within Rru_A0766 at 903.948 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 904.179 kb on + strand at 904.179 kb on + strand at 904.179 kb on + strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.184 kb on - strand at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.627 kb on - strand, within Rru_A0767 at 905.581 kb on + strand, within Rru_A0768 at 905.758 kb on + strand, within Rru_A0768 at 905.759 kb on - strand, within Rru_A0768 at 905.868 kb on - strand, within Rru_A0768 at 906.002 kb on + strand, within Rru_A0768 at 906.003 kb on - strand, within Rru_A0768
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 903,290 + Rru_A0766 0.15 -0.0 903,290 + Rru_A0766 0.15 +1.4 903,290 + Rru_A0766 0.15 -0.0 903,290 + Rru_A0766 0.15 +0.5 903,290 + Rru_A0766 0.15 -0.9 903,290 + Rru_A0766 0.15 -1.0 903,290 + Rru_A0766 0.15 +1.7 903,290 + Rru_A0766 0.15 +1.0 903,291 - Rru_A0766 0.15 -0.2 903,291 - Rru_A0766 0.15 +2.3 903,291 - Rru_A0766 0.15 -1.6 903,291 - Rru_A0766 0.15 -1.0 903,292 + Rru_A0766 0.15 -0.5 903,293 - Rru_A0766 0.15 +0.7 903,305 - Rru_A0766 0.16 -0.0 903,532 + Rru_A0766 0.39 -0.6 903,533 - Rru_A0766 0.39 +0.1 903,533 - Rru_A0766 0.39 +3.0 903,641 + Rru_A0766 0.49 +1.0 903,641 + Rru_A0766 0.49 +1.1 903,641 + Rru_A0766 0.49 -1.0 903,642 - Rru_A0766 0.50 +0.2 903,726 + Rru_A0766 0.58 +0.8 903,727 - Rru_A0766 0.58 +1.1 903,834 - Rru_A0766 0.69 -0.0 903,898 + Rru_A0766 0.75 -0.0 903,898 + Rru_A0766 0.75 -0.0 903,898 + Rru_A0766 0.75 +1.7 903,899 - Rru_A0766 0.75 -0.0 903,948 - Rru_A0766 0.80 -0.0 903,959 - Rru_A0766 0.81 +0.4 903,959 - Rru_A0766 0.81 +1.6 903,994 + Rru_A0766 0.85 +1.9 903,994 + Rru_A0766 0.85 +0.8 903,994 + Rru_A0766 0.85 +0.8 903,995 - Rru_A0766 0.85 +2.0 903,995 - Rru_A0766 0.85 +2.8 904,179 + +1.9 904,179 + +1.6 904,179 + +1.5 904,180 - +1.0 904,180 - +1.0 904,180 - +2.7 904,180 - +1.0 904,180 - -0.0 904,180 - -0.0 904,180 - -0.2 904,184 - -0.0 904,626 + Rru_A0767 0.35 +0.8 904,626 + Rru_A0767 0.35 -0.0 904,626 + Rru_A0767 0.35 +2.6 904,627 - Rru_A0767 0.35 -0.0 905,581 + Rru_A0768 0.16 +0.7 905,758 + Rru_A0768 0.26 -0.0 905,759 - Rru_A0768 0.26 +0.9 905,868 - Rru_A0768 0.33 -0.0 906,002 + Rru_A0768 0.41 -1.0 906,003 - Rru_A0768 0.41 -0.4
Or see this region's nucleotide sequence