Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0763 and Rru_A0764 overlap by 1 nucleotides Rru_A0764 and Rru_A0765 are separated by 378 nucleotides Rru_A0765 and Rru_A0766 are separated by 987 nucleotides
Rru_A0763: Rru_A0763 - Radical SAM (NCBI), at 896,962 to 898,026
_A0763
Rru_A0764: Rru_A0764 - HesB/YadR/YfhF (NCBI), at 898,026 to 898,340
_A0764
Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156
_A0765
Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148
_A0766
Position (kb) 898
899
900
901
902
903 Strain fitness (log2 ratio) -1
0
1
2
3 at 897.760 kb on + strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.794 kb on - strand, within Rru_A0763 at 897.897 kb on + strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.338 kb on + strand at 898.339 kb on - strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.453 kb on - strand at 898.453 kb on - strand at 898.513 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.695 kb on + strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.736 kb on - strand at 898.877 kb on - strand at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.294 kb on + strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.454 kb on - strand, within Rru_A0765 at 899.490 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.523 kb on - strand, within Rru_A0765 at 899.523 kb on - strand, within Rru_A0765 at 899.703 kb on - strand, within Rru_A0765 at 899.837 kb on - strand, within Rru_A0765 at 899.907 kb on - strand, within Rru_A0765 at 899.907 kb on - strand, within Rru_A0765 at 899.924 kb on - strand, within Rru_A0765 at 900.103 kb on - strand, within Rru_A0765 at 900.142 kb on - strand, within Rru_A0765 at 900.215 kb on - strand, within Rru_A0765 at 900.412 kb on - strand, within Rru_A0765 at 900.493 kb on - strand, within Rru_A0765 at 900.519 kb on - strand, within Rru_A0765 at 900.519 kb on - strand, within Rru_A0765 at 900.599 kb on - strand, within Rru_A0765 at 900.674 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.734 kb on - strand, within Rru_A0765 at 900.829 kb on - strand, within Rru_A0765 at 900.829 kb on - strand, within Rru_A0765 at 900.877 kb on - strand, within Rru_A0765 at 900.877 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 901.044 kb on + strand, within Rru_A0765 at 901.045 kb on - strand, within Rru_A0765 at 901.084 kb on + strand, within Rru_A0765 at 901.084 kb on + strand, within Rru_A0765 at 901.085 kb on - strand, within Rru_A0765 at 901.085 kb on - strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.087 kb on - strand, within Rru_A0765 at 901.137 kb on + strand, within Rru_A0765 at 901.144 kb on - strand, within Rru_A0765 at 901.200 kb on + strand, within Rru_A0765 at 901.251 kb on + strand, within Rru_A0765 at 901.251 kb on + strand, within Rru_A0765 at 901.367 kb on - strand, within Rru_A0765 at 901.385 kb on - strand, within Rru_A0765 at 901.385 kb on - strand, within Rru_A0765 at 901.425 kb on - strand, within Rru_A0765 at 901.507 kb on - strand, within Rru_A0765 at 901.507 kb on - strand, within Rru_A0765 at 901.510 kb on - strand, within Rru_A0765 at 901.565 kb on + strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.807 kb on - strand, within Rru_A0765 at 901.826 kb on - strand at 901.826 kb on - strand at 901.826 kb on - strand at 901.860 kb on - strand at 901.860 kb on - strand at 901.897 kb on - strand at 901.897 kb on - strand at 901.897 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.936 kb on - strand at 902.009 kb on - strand at 902.011 kb on - strand at 902.103 kb on - strand at 902.103 kb on - strand at 902.104 kb on + strand at 902.131 kb on + strand at 902.131 kb on + strand at 902.132 kb on - strand at 902.132 kb on - strand at 902.189 kb on - strand at 902.201 kb on - strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.264 kb on - strand at 902.298 kb on + strand at 902.298 kb on + strand at 902.299 kb on - strand at 902.300 kb on - strand at 902.306 kb on + strand at 902.306 kb on + strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.356 kb on + strand at 902.357 kb on - strand at 902.365 kb on + strand at 902.365 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.438 kb on - strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.483 kb on - strand at 902.649 kb on + strand at 902.649 kb on + strand at 902.650 kb on - strand at 902.662 kb on - strand at 902.695 kb on + strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.700 kb on + strand at 902.751 kb on - strand at 902.920 kb on + strand at 902.984 kb on - strand at 903.023 kb on + strand at 903.025 kb on + strand at 903.026 kb on - strand at 903.026 kb on - strand at 903.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 897,760 + Rru_A0763 0.75 -0.6 897,761 - Rru_A0763 0.75 -0.0 897,761 - Rru_A0763 0.75 +0.9 897,794 - Rru_A0763 0.78 +1.4 897,897 + Rru_A0763 0.88 -0.0 897,898 - Rru_A0763 0.88 +1.0 897,898 - Rru_A0763 0.88 +2.2 898,052 + -0.0 898,052 + -0.0 898,052 + +1.3 898,052 + +1.5 898,052 + +0.7 898,053 - +2.4 898,053 - +1.6 898,053 - +1.2 898,053 - +2.2 898,053 - -0.0 898,053 - +1.0 898,165 - Rru_A0764 0.44 +1.0 898,165 - Rru_A0764 0.44 -0.0 898,165 - Rru_A0764 0.44 +0.7 898,165 - Rru_A0764 0.44 -0.0 898,173 + Rru_A0764 0.47 +0.7 898,173 + Rru_A0764 0.47 +0.6 898,173 + Rru_A0764 0.47 -1.0 898,338 + -1.0 898,339 - +1.6 898,374 + +0.4 898,374 + -0.3 898,374 + -0.0 898,374 + -0.0 898,374 + +0.6 898,374 + +0.6 898,375 - +0.7 898,375 - +0.2 898,375 - +1.0 898,375 - +1.6 898,375 - +1.1 898,453 - +0.7 898,453 - +1.0 898,513 - +0.5 898,654 - +0.9 898,654 - +2.8 898,654 - +1.6 898,695 + -0.0 898,696 - -0.0 898,696 - +0.7 898,696 - +1.1 898,696 - -0.0 898,696 - +1.5 898,696 - +0.4 898,736 - +1.3 898,877 - -1.0 899,147 - Rru_A0765 0.12 +0.9 899,147 - Rru_A0765 0.12 +1.1 899,147 - Rru_A0765 0.12 +1.8 899,152 - Rru_A0765 0.13 +1.7 899,152 - Rru_A0765 0.13 -0.0 899,213 - Rru_A0765 0.14 -1.0 899,213 - Rru_A0765 0.14 +1.3 899,294 + Rru_A0765 0.17 -0.1 899,305 - Rru_A0765 0.17 -1.0 899,305 - Rru_A0765 0.17 -0.0 899,305 - Rru_A0765 0.17 +2.7 899,381 - Rru_A0765 0.19 -0.0 899,381 - Rru_A0765 0.19 +1.3 899,381 - Rru_A0765 0.19 +1.7 899,381 - Rru_A0765 0.19 +2.8 899,381 - Rru_A0765 0.19 +0.8 899,454 - Rru_A0765 0.21 +1.0 899,490 - Rru_A0765 0.22 +1.6 899,505 - Rru_A0765 0.23 +1.5 899,505 - Rru_A0765 0.23 +2.1 899,505 - Rru_A0765 0.23 +1.3 899,505 - Rru_A0765 0.23 +0.9 899,523 - Rru_A0765 0.23 +0.8 899,523 - Rru_A0765 0.23 +0.9 899,703 - Rru_A0765 0.29 +1.0 899,837 - Rru_A0765 0.33 -0.0 899,907 - Rru_A0765 0.35 -0.0 899,907 - Rru_A0765 0.35 +1.1 899,924 - Rru_A0765 0.35 -0.0 900,103 - Rru_A0765 0.40 -1.0 900,142 - Rru_A0765 0.41 +1.2 900,215 - Rru_A0765 0.44 +1.5 900,412 - Rru_A0765 0.49 -1.0 900,493 - Rru_A0765 0.52 +0.8 900,519 - Rru_A0765 0.52 -0.0 900,519 - Rru_A0765 0.52 +0.8 900,599 - Rru_A0765 0.55 +0.9 900,674 - Rru_A0765 0.57 +1.0 900,716 - Rru_A0765 0.58 +3.4 900,716 - Rru_A0765 0.58 +1.4 900,716 - Rru_A0765 0.58 +1.2 900,734 - Rru_A0765 0.59 +1.5 900,829 - Rru_A0765 0.61 +1.1 900,829 - Rru_A0765 0.61 +0.4 900,877 - Rru_A0765 0.63 +1.0 900,877 - Rru_A0765 0.63 +3.7 900,973 - Rru_A0765 0.66 -0.0 900,973 - Rru_A0765 0.66 -0.0 900,973 - Rru_A0765 0.66 +0.6 901,044 + Rru_A0765 0.68 -0.0 901,045 - Rru_A0765 0.68 +1.5 901,084 + Rru_A0765 0.69 -0.0 901,084 + Rru_A0765 0.69 +1.3 901,085 - Rru_A0765 0.69 +0.9 901,085 - Rru_A0765 0.69 -0.0 901,086 + Rru_A0765 0.69 +2.2 901,086 + Rru_A0765 0.69 +1.9 901,086 + Rru_A0765 0.69 +1.0 901,087 - Rru_A0765 0.69 +1.1 901,137 + Rru_A0765 0.70 +0.6 901,144 - Rru_A0765 0.71 +1.1 901,200 + Rru_A0765 0.72 +0.4 901,251 + Rru_A0765 0.74 +1.3 901,251 + Rru_A0765 0.74 +0.5 901,367 - Rru_A0765 0.77 +1.5 901,385 - Rru_A0765 0.78 +0.6 901,385 - Rru_A0765 0.78 +0.9 901,425 - Rru_A0765 0.79 +1.0 901,507 - Rru_A0765 0.81 -0.0 901,507 - Rru_A0765 0.81 +0.8 901,510 - Rru_A0765 0.81 -1.0 901,565 + Rru_A0765 0.83 +1.6 901,566 - Rru_A0765 0.83 -0.0 901,566 - Rru_A0765 0.83 -0.0 901,566 - Rru_A0765 0.83 +2.0 901,566 - Rru_A0765 0.83 +2.3 901,566 - Rru_A0765 0.83 -0.0 901,807 - Rru_A0765 0.90 -0.0 901,826 - +1.0 901,826 - +0.6 901,826 - +1.4 901,860 - +0.4 901,860 - +2.2 901,897 - +2.3 901,897 - -1.0 901,897 - +1.3 901,934 - +1.1 901,934 - +1.2 901,934 - +0.8 901,934 - -1.0 901,934 - -0.0 901,934 - -0.0 901,936 - +0.6 902,009 - +1.0 902,011 - +1.5 902,103 - +1.1 902,103 - -0.0 902,104 + -0.3 902,131 + +1.3 902,131 + -0.0 902,132 - -0.0 902,132 - +0.9 902,189 - +2.7 902,201 - +1.3 902,241 + -0.0 902,241 + +0.7 902,241 + -0.0 902,242 - +0.1 902,242 - -0.2 902,242 - -0.0 902,242 - -1.0 902,264 - +1.3 902,298 + +1.3 902,298 + -0.0 902,299 - +1.5 902,300 - +1.2 902,306 + -0.0 902,306 + +0.5 902,307 - +0.7 902,307 - +0.6 902,307 - +1.2 902,307 - +1.0 902,356 + +0.9 902,357 - +1.2 902,365 + -0.0 902,365 + +1.0 902,428 + +1.1 902,428 + +1.0 902,428 + -0.0 902,428 + -0.0 902,438 - +1.6 902,451 + +2.0 902,451 + -0.0 902,451 + -0.5 902,483 - +1.3 902,649 + +0.9 902,649 + -0.0 902,650 - +0.7 902,662 - +3.0 902,695 + -1.0 902,696 - +0.9 902,696 - +1.5 902,696 - -0.0 902,696 - +0.9 902,696 - +0.3 902,696 - +1.0 902,700 + -0.0 902,751 - +1.8 902,920 + -0.0 902,984 - +1.1 903,023 + +2.3 903,025 + +1.3 903,026 - -0.0 903,026 - +2.2 903,030 + +0.6
Or see this region's nucleotide sequence