Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0762

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0761 and Rru_A0762 are separated by 38 nucleotidesRru_A0762 and Rru_A0763 overlap by 4 nucleotides Rru_A0761: Rru_A0761 - Radical SAM (NCBI), at 893,961 to 895,472 _A0761 Rru_A0762: Rru_A0762 - Fe-S oxidoreductase (NCBI), at 895,511 to 896,965 _A0762 Rru_A0763: Rru_A0763 - Radical SAM (NCBI), at 896,962 to 898,026 _A0763 Position (kb) 895 896 897Strain fitness (log2 ratio) -1 0 1 2 3 4at 894.531 kb on + strand, within Rru_A0761at 894.562 kb on - strand, within Rru_A0761at 894.564 kb on - strand, within Rru_A0761at 894.626 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.882 kb on - strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.984 kb on + strand, within Rru_A0761at 895.306 kb on - strand, within Rru_A0761at 895.306 kb on - strand, within Rru_A0761at 895.470 kb on + strandat 895.471 kb on - strandat 895.471 kb on - strandat 895.499 kb on - strandat 895.570 kb on + strandat 895.727 kb on + strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.728 kb on - strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.745 kb on + strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.746 kb on - strand, within Rru_A0762at 895.749 kb on - strand, within Rru_A0762at 895.829 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.835 kb on + strand, within Rru_A0762at 895.836 kb on - strand, within Rru_A0762at 895.836 kb on - strand, within Rru_A0762at 896.024 kb on - strand, within Rru_A0762at 896.024 kb on - strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.067 kb on - strand, within Rru_A0762at 896.150 kb on + strand, within Rru_A0762at 896.199 kb on - strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.245 kb on + strand, within Rru_A0762at 896.246 kb on - strand, within Rru_A0762at 896.253 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.336 kb on + strand, within Rru_A0762at 896.381 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.463 kb on - strand, within Rru_A0762at 896.603 kb on + strand, within Rru_A0762at 896.603 kb on + strand, within Rru_A0762at 896.604 kb on - strand, within Rru_A0762at 896.604 kb on - strand, within Rru_A0762at 896.625 kb on - strand, within Rru_A0762at 896.660 kb on + strand, within Rru_A0762at 896.661 kb on - strand, within Rru_A0762at 896.717 kb on + strand, within Rru_A0762at 896.717 kb on + strand, within Rru_A0762at 896.718 kb on - strand, within Rru_A0762at 896.718 kb on - strand, within Rru_A0762at 896.762 kb on + strand, within Rru_A0762at 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.061 kb on - strandat 897.181 kb on + strand, within Rru_A0763at 897.181 kb on + strand, within Rru_A0763at 897.181 kb on + strand, within Rru_A0763at 897.182 kb on - strand, within Rru_A0763at 897.208 kb on + strand, within Rru_A0763at 897.209 kb on - strand, within Rru_A0763at 897.217 kb on + strand, within Rru_A0763at 897.438 kb on + strand, within Rru_A0763at 897.438 kb on + strand, within Rru_A0763at 897.514 kb on + strand, within Rru_A0763at 897.514 kb on + strand, within Rru_A0763at 897.515 kb on - strand, within Rru_A0763at 897.664 kb on + strand, within Rru_A0763at 897.665 kb on - strand, within Rru_A0763at 897.665 kb on - strand, within Rru_A0763at 897.688 kb on + strand, within Rru_A0763at 897.689 kb on - strand, within Rru_A0763at 897.760 kb on + strand, within Rru_A0763at 897.761 kb on - strand, within Rru_A0763at 897.761 kb on - strand, within Rru_A0763at 897.794 kb on - strand, within Rru_A0763at 897.897 kb on + strand, within Rru_A0763at 897.898 kb on - strand, within Rru_A0763at 897.898 kb on - strand, within Rru_A0763

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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894,531 + Rru_A0761 0.38 +2.2
894,562 - Rru_A0761 0.40 +1.0
894,564 - Rru_A0761 0.40 -0.5
894,626 + Rru_A0761 0.44 +1.2
894,740 + Rru_A0761 0.52 -0.2
894,740 + Rru_A0761 0.52 +2.2
894,741 - Rru_A0761 0.52 -0.0
894,741 - Rru_A0761 0.52 +1.4
894,882 - Rru_A0761 0.61 +1.5
894,888 + Rru_A0761 0.61 +1.1
894,888 + Rru_A0761 0.61 -0.7
894,888 + Rru_A0761 0.61 +1.1
894,888 + Rru_A0761 0.61 +2.0
894,888 + Rru_A0761 0.61 +1.2
894,889 - Rru_A0761 0.61 +1.7
894,889 - Rru_A0761 0.61 -0.5
894,889 - Rru_A0761 0.61 +0.8
894,889 - Rru_A0761 0.61 +0.2
894,889 - Rru_A0761 0.61 +0.7
894,889 - Rru_A0761 0.61 +1.4
894,889 - Rru_A0761 0.61 +1.3
894,890 + Rru_A0761 0.61 +1.3
894,890 + Rru_A0761 0.61 -1.6
894,890 + Rru_A0761 0.61 +1.5
894,890 + Rru_A0761 0.61 +0.7
894,890 + Rru_A0761 0.61 -0.0
894,890 + Rru_A0761 0.61 +0.3
894,890 + Rru_A0761 0.61 +3.0
894,890 + Rru_A0761 0.61 +2.0
894,891 - Rru_A0761 0.62 +1.9
894,891 - Rru_A0761 0.62 -1.0
894,891 - Rru_A0761 0.62 -1.0
894,984 + Rru_A0761 0.68 +1.4
895,306 - Rru_A0761 0.89 -0.0
895,306 - Rru_A0761 0.89 +1.0
895,470 + +2.3
895,471 - -0.0
895,471 - +0.9
895,499 - +0.7
895,570 + +3.0
895,727 + Rru_A0762 0.15 +0.9
895,728 - Rru_A0762 0.15 +0.8
895,728 - Rru_A0762 0.15 -0.1
895,728 - Rru_A0762 0.15 +1.8
895,745 + Rru_A0762 0.16 +0.8
895,745 + Rru_A0762 0.16 +1.2
895,745 + Rru_A0762 0.16 +1.2
895,746 - Rru_A0762 0.16 -0.0
895,746 - Rru_A0762 0.16 +1.2
895,746 - Rru_A0762 0.16 -0.0
895,749 - Rru_A0762 0.16 -0.0
895,829 + Rru_A0762 0.22 +0.8
895,835 + Rru_A0762 0.22 -1.3
895,835 + Rru_A0762 0.22 -0.0
895,835 + Rru_A0762 0.22 +0.8
895,836 - Rru_A0762 0.22 -0.0
895,836 - Rru_A0762 0.22 -0.0
896,024 - Rru_A0762 0.35 -1.3
896,024 - Rru_A0762 0.35 +0.4
896,066 + Rru_A0762 0.38 -0.0
896,066 + Rru_A0762 0.38 +0.4
896,067 - Rru_A0762 0.38 +1.0
896,150 + Rru_A0762 0.44 +0.8
896,199 - Rru_A0762 0.47 +1.2
896,225 + Rru_A0762 0.49 +0.9
896,225 + Rru_A0762 0.49 +3.9
896,245 + Rru_A0762 0.50 +1.5
896,246 - Rru_A0762 0.51 +0.5
896,253 - Rru_A0762 0.51 -0.0
896,316 - Rru_A0762 0.55 +1.4
896,316 - Rru_A0762 0.55 -0.0
896,336 + Rru_A0762 0.57 +1.3
896,381 + Rru_A0762 0.60 +1.1
896,443 + Rru_A0762 0.64 +1.0
896,443 + Rru_A0762 0.64 +0.8
896,443 + Rru_A0762 0.64 +0.7
896,443 + Rru_A0762 0.64 -0.6
896,444 - Rru_A0762 0.64 +1.3
896,444 - Rru_A0762 0.64 +1.7
896,444 - Rru_A0762 0.64 -0.0
896,462 + Rru_A0762 0.65 +0.7
896,462 + Rru_A0762 0.65 +0.9
896,462 + Rru_A0762 0.65 -0.0
896,463 - Rru_A0762 0.65 -0.0
896,603 + Rru_A0762 0.75 +1.3
896,603 + Rru_A0762 0.75 +0.1
896,604 - Rru_A0762 0.75 -0.0
896,604 - Rru_A0762 0.75 +2.2
896,625 - Rru_A0762 0.77 -0.0
896,660 + Rru_A0762 0.79 +0.8
896,661 - Rru_A0762 0.79 -0.0
896,717 + Rru_A0762 0.83 +0.8
896,717 + Rru_A0762 0.83 +0.5
896,718 - Rru_A0762 0.83 +1.1
896,718 - Rru_A0762 0.83 +3.0
896,762 + Rru_A0762 0.86 +0.3
897,058 + +1.0
897,058 + +4.1
897,058 + -0.0
897,058 + +1.5
897,058 + +2.1
897,058 + +4.1
897,059 - -0.0
897,059 - -0.0
897,059 - +3.4
897,059 - +1.3
897,061 - +1.3
897,181 + Rru_A0763 0.21 -0.0
897,181 + Rru_A0763 0.21 +1.3
897,181 + Rru_A0763 0.21 +1.0
897,182 - Rru_A0763 0.21 +1.3
897,208 + Rru_A0763 0.23 -0.0
897,209 - Rru_A0763 0.23 -0.0
897,217 + Rru_A0763 0.24 -0.3
897,438 + Rru_A0763 0.45 +1.0
897,438 + Rru_A0763 0.45 +1.5
897,514 + Rru_A0763 0.52 -0.0
897,514 + Rru_A0763 0.52 +1.4
897,515 - Rru_A0763 0.52 +0.1
897,664 + Rru_A0763 0.66 +0.7
897,665 - Rru_A0763 0.66 +2.2
897,665 - Rru_A0763 0.66 +1.0
897,688 + Rru_A0763 0.68 -0.0
897,689 - Rru_A0763 0.68 +1.5
897,760 + Rru_A0763 0.75 -0.6
897,761 - Rru_A0763 0.75 -0.0
897,761 - Rru_A0763 0.75 +0.9
897,794 - Rru_A0763 0.78 +1.4
897,897 + Rru_A0763 0.88 -0.0
897,898 - Rru_A0763 0.88 +1.0
897,898 - Rru_A0763 0.88 +2.2

Or see this region's nucleotide sequence