Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0751 and Rru_A0752 are separated by 585 nucleotides Rru_A0752 and Rru_A0753 are separated by 226 nucleotides
Rru_A0751: Rru_A0751 - Modification methylase HemK (NCBI), at 880,072 to 881,049
_A0751
Rru_A0752: Rru_A0752 - hypothetical protein (NCBI), at 881,635 to 882,582
_A0752
Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421
_A0753
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 880.995 kb on + strand at 881.103 kb on + strand at 881.142 kb on + strand at 881.378 kb on + strand at 881.379 kb on - strand at 881.549 kb on + strand at 882.022 kb on + strand, within Rru_A0752 at 882.023 kb on - strand, within Rru_A0752 at 882.049 kb on + strand, within Rru_A0752 at 882.651 kb on - strand at 882.651 kb on - strand at 882.651 kb on - strand at 882.714 kb on + strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.715 kb on - strand at 882.718 kb on + strand at 882.719 kb on - strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.729 kb on + strand at 882.730 kb on - strand at 882.757 kb on + strand at 882.758 kb on - strand at 882.758 kb on - strand at 882.785 kb on - strand at 882.803 kb on + strand at 882.803 kb on + strand at 882.804 kb on - strand at 882.804 kb on - strand at 882.809 kb on - strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.931 kb on + strand at 882.932 kb on - strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.049 kb on + strand at 883.050 kb on - strand at 883.050 kb on - strand at 883.050 kb on - strand at 883.280 kb on + strand, within Rru_A0753 at 883.281 kb on - strand, within Rru_A0753 at 883.298 kb on + strand, within Rru_A0753 at 883.298 kb on + strand, within Rru_A0753 at 883.299 kb on - strand, within Rru_A0753 at 883.299 kb on - strand, within Rru_A0753
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 880,995 + +2.7 881,103 + -0.0 881,142 + +0.7 881,378 + +2.8 881,379 - -0.0 881,549 + +2.6 882,022 + Rru_A0752 0.41 -1.0 882,023 - Rru_A0752 0.41 -0.0 882,049 + Rru_A0752 0.44 -0.0 882,651 - -0.0 882,651 - -0.0 882,651 - -0.6 882,714 + -1.0 882,715 - -0.0 882,715 - -0.0 882,715 - -0.0 882,715 - +1.6 882,715 - -0.0 882,715 - -0.0 882,718 + -1.3 882,719 - -0.6 882,729 + +1.4 882,729 + +2.1 882,729 + +2.0 882,729 + -2.0 882,730 - -0.0 882,757 + +1.3 882,758 - -0.0 882,758 - -1.8 882,785 - -0.5 882,803 + -0.0 882,803 + -1.0 882,804 - -1.6 882,804 - -0.0 882,809 - -0.0 882,931 + -1.6 882,931 + -1.0 882,931 + -1.0 882,931 + -0.0 882,932 - -0.0 883,049 + -1.0 883,049 + -0.0 883,049 + -0.0 883,049 + +1.4 883,049 + -0.0 883,049 + -0.0 883,050 - +1.0 883,050 - -1.6 883,050 - -0.0 883,280 + Rru_A0753 0.18 -0.0 883,281 - Rru_A0753 0.18 -1.6 883,298 + Rru_A0753 0.19 -0.0 883,298 + Rru_A0753 0.19 -0.0 883,299 - Rru_A0753 0.19 +0.6 883,299 - Rru_A0753 0.19 -0.0
Or see this region's nucleotide sequence