Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0745 and Rru_A0746 are separated by 217 nucleotides Rru_A0746 and Rru_A0747 are separated by 134 nucleotides
Rru_A0745: Rru_A0745 - PTSINtr with GAF domain, PtsP (NCBI), at 870,988 to 873,255
_A0745
Rru_A0746: Rru_A0746 - hypothetical protein (NCBI), at 873,473 to 875,005
_A0746
Rru_A0747: Rru_A0747 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI), at 875,140 to 876,294
_A0747
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 872.551 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.944 kb on + strand, within Rru_A0745 at 872.945 kb on - strand, within Rru_A0745 at 873.147 kb on + strand at 873.166 kb on + strand at 873.167 kb on - strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.240 kb on + strand at 873.253 kb on + strand at 873.374 kb on + strand at 873.375 kb on - strand at 873.423 kb on + strand at 873.424 kb on - strand at 873.424 kb on - strand at 873.428 kb on + strand at 873.428 kb on + strand at 873.429 kb on - strand at 873.429 kb on - strand at 874.847 kb on + strand, within Rru_A0746 at 874.847 kb on + strand, within Rru_A0746 at 874.847 kb on + strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.848 kb on - strand, within Rru_A0746 at 874.910 kb on + strand at 874.911 kb on - strand at 875.012 kb on + strand at 875.016 kb on + strand at 875.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 872,551 + Rru_A0745 0.69 -0.4 872,944 + Rru_A0745 0.86 +2.3 872,944 + Rru_A0745 0.86 +1.5 872,944 + Rru_A0745 0.86 +0.9 872,945 - Rru_A0745 0.86 +0.9 873,147 + +1.1 873,166 + -0.0 873,167 - +0.6 873,240 + -1.0 873,240 + +1.0 873,240 + +1.3 873,240 + +1.7 873,253 + +1.3 873,374 + +2.3 873,375 - +1.5 873,423 + +1.9 873,424 - +1.1 873,424 - -0.0 873,428 + -1.0 873,428 + -0.0 873,429 - -0.0 873,429 - -0.0 874,847 + Rru_A0746 0.90 -0.0 874,847 + Rru_A0746 0.90 -0.0 874,847 + Rru_A0746 0.90 +3.2 874,848 - Rru_A0746 0.90 -0.0 874,848 - Rru_A0746 0.90 -0.0 874,848 - Rru_A0746 0.90 -0.0 874,910 + +2.0 874,911 - -0.0 875,012 + +1.7 875,016 + +1.9 875,016 + -2.0
Or see this region's nucleotide sequence