Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0730 and Rru_A0731 are separated by 166 nucleotides Rru_A0731 and Rru_A0732 are separated by 87 nucleotides Rru_A0732 and Rru_A0733 overlap by 4 nucleotides Rru_A0733 and Rru_A0734 are separated by 114 nucleotides
Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434
_A0730
Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302
_A0731
Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121
_A0732
Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933
_A0733
Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503
_A0734
Position (kb) 859
860
861 Strain fitness (log2 ratio) -1
0
1
2
3 at 858.601 kb on - strand at 858.659 kb on + strand at 858.659 kb on + strand at 858.660 kb on - strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.300 kb on + strand at 859.301 kb on - strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.333 kb on + strand at 859.334 kb on - strand at 859.373 kb on - strand at 859.392 kb on - strand at 859.392 kb on - strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.443 kb on + strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.444 kb on - strand at 859.555 kb on + strand, within Rru_A0732 at 859.555 kb on + strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.556 kb on - strand, within Rru_A0732 at 859.557 kb on + strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.558 kb on - strand, within Rru_A0732 at 859.731 kb on - strand, within Rru_A0732 at 859.969 kb on + strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 859.970 kb on - strand, within Rru_A0732 at 860.048 kb on + strand at 860.048 kb on + strand at 860.049 kb on - strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.975 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.977 kb on + strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 860.978 kb on - strand at 861.033 kb on + strand at 861.034 kb on - strand at 861.108 kb on + strand, within Rru_A0734
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 858,601 - +1.4 858,659 + -0.0 858,659 + +1.9 858,660 - -0.0 859,300 + +1.1 859,300 + -0.0 859,300 + -0.0 859,301 - +1.3 859,333 + -0.0 859,333 + +0.2 859,333 + +1.2 859,333 + -0.0 859,333 + -1.6 859,334 - -0.0 859,373 - -0.0 859,392 - -0.0 859,392 - +3.0 859,443 + +1.5 859,443 + +1.4 859,443 + +1.0 859,443 + -1.0 859,444 - -0.0 859,444 - +2.6 859,444 - +1.6 859,444 - +1.3 859,444 - +1.0 859,444 - +2.2 859,555 + Rru_A0732 0.23 -0.0 859,555 + Rru_A0732 0.23 -0.0 859,556 - Rru_A0732 0.23 +1.1 859,556 - Rru_A0732 0.23 -0.0 859,557 + Rru_A0732 0.23 +0.1 859,558 - Rru_A0732 0.23 +0.6 859,558 - Rru_A0732 0.23 +0.9 859,558 - Rru_A0732 0.23 -0.0 859,731 - Rru_A0732 0.47 -0.8 859,969 + Rru_A0732 0.79 +0.5 859,970 - Rru_A0732 0.79 +1.2 859,970 - Rru_A0732 0.79 +1.2 859,970 - Rru_A0732 0.79 +2.3 859,970 - Rru_A0732 0.79 -0.0 860,048 + +1.3 860,048 + +2.8 860,049 - -0.2 860,975 + +0.3 860,975 + +1.1 860,975 + -0.0 860,975 + +0.9 860,975 + +0.9 860,975 + +0.5 860,975 + +0.1 860,975 + -0.0 860,975 + -1.6 860,977 + -0.0 860,977 + +1.4 860,977 + -0.0 860,977 + +1.8 860,977 + -0.0 860,977 + -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 860,978 - -0.0 861,033 + -0.0 861,034 - +0.2 861,108 + Rru_A0734 0.13 +1.8
Or see this region's nucleotide sequence