Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0674 and Rru_A0675 are separated by 805 nucleotides Rru_A0675 and Rru_A0676 are separated by 260 nucleotides
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Rru_A0675: Rru_A0675 - hypothetical protein (NCBI), at 797,870 to 798,844
_A0675
Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136
_A0676
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 796.887 kb on + strand, within Rru_A0674 at 796.888 kb on - strand, within Rru_A0674 at 796.905 kb on + strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.975 kb on - strand at 796.990 kb on + strand at 797.002 kb on + strand at 797.003 kb on - strand at 797.124 kb on + strand at 797.127 kb on + strand at 797.127 kb on + strand at 797.128 kb on - strand at 797.146 kb on - strand at 797.179 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.190 kb on - strand at 797.236 kb on + strand at 797.243 kb on + strand at 797.244 kb on - strand at 797.295 kb on + strand at 797.319 kb on - strand at 797.352 kb on + strand at 797.384 kb on + strand at 797.384 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.521 kb on + strand at 797.521 kb on + strand at 797.542 kb on + strand at 797.591 kb on + strand at 797.641 kb on + strand at 797.641 kb on + strand at 797.757 kb on - strand at 798.065 kb on - strand, within Rru_A0675 at 798.143 kb on + strand, within Rru_A0675 at 798.144 kb on - strand, within Rru_A0675 at 798.237 kb on + strand, within Rru_A0675 at 798.340 kb on + strand, within Rru_A0675 at 798.341 kb on - strand, within Rru_A0675 at 798.370 kb on - strand, within Rru_A0675 at 798.532 kb on + strand, within Rru_A0675 at 798.540 kb on + strand, within Rru_A0675 at 798.543 kb on + strand, within Rru_A0675 at 798.835 kb on + strand at 798.977 kb on - strand at 799.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 796,887 + Rru_A0674 0.85 +1.4 796,888 - Rru_A0674 0.85 -1.6 796,905 + Rru_A0674 0.86 +0.8 796,906 - Rru_A0674 0.86 +1.4 796,906 - Rru_A0674 0.86 -0.0 796,906 - Rru_A0674 0.86 +0.7 796,975 - +1.0 796,990 + +0.4 797,002 + -0.0 797,003 - -0.0 797,124 + +1.6 797,127 + -0.0 797,127 + +1.2 797,128 - -0.0 797,146 - +1.6 797,179 - +2.3 797,188 - -0.0 797,188 - +1.2 797,188 - +1.7 797,190 - -0.0 797,236 + -0.0 797,243 + +0.3 797,244 - +1.2 797,295 + -0.0 797,319 - +0.8 797,352 + +0.5 797,384 + +0.9 797,384 + +0.4 797,477 + +3.0 797,477 + -0.0 797,521 + -0.0 797,521 + +1.0 797,542 + -0.0 797,591 + +1.4 797,641 + -1.0 797,641 + -0.0 797,757 - -0.0 798,065 - Rru_A0675 0.20 -0.0 798,143 + Rru_A0675 0.28 +0.5 798,144 - Rru_A0675 0.28 +0.7 798,237 + Rru_A0675 0.38 -0.4 798,340 + Rru_A0675 0.48 +1.0 798,341 - Rru_A0675 0.48 -2.2 798,370 - Rru_A0675 0.51 +1.4 798,532 + Rru_A0675 0.68 +2.0 798,540 + Rru_A0675 0.69 +1.0 798,543 + Rru_A0675 0.69 +1.3 798,835 + +2.5 798,977 - +0.3 799,018 - +0.8
Or see this region's nucleotide sequence