Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0672 and Rru_AR0017 are separated by 217 nucleotides Rru_AR0017 and Rru_A0673 are separated by 44 nucleotides Rru_A0673 and Rru_A0674 are separated by 57 nucleotides Rru_A0674 and Rru_A0675 are separated by 805 nucleotides
Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188
_A0672
Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496
_AR0017
Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846
_A0673
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Rru_A0675: Rru_A0675 - hypothetical protein (NCBI), at 797,870 to 798,844
_A0675
Position (kb) 795
796
797
798 Strain fitness (log2 ratio) -1
0
1
2
3 at 795.021 kb on - strand, within Rru_A0672 at 795.094 kb on + strand, within Rru_A0672 at 795.095 kb on - strand, within Rru_A0672 at 795.169 kb on - strand at 795.169 kb on - strand at 795.174 kb on - strand at 795.184 kb on - strand at 795.256 kb on + strand at 795.256 kb on + strand at 795.257 kb on - strand at 795.519 kb on + strand at 795.522 kb on + strand at 795.598 kb on + strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.793 kb on - strand, within Rru_A0673 at 795.837 kb on + strand at 795.837 kb on + strand at 795.838 kb on - strand at 795.840 kb on + strand at 795.840 kb on + strand at 795.841 kb on - strand at 795.841 kb on - strand at 795.928 kb on - strand at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.134 kb on - strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.345 kb on + strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.346 kb on - strand, within Rru_A0674 at 796.349 kb on - strand, within Rru_A0674 at 796.366 kb on + strand, within Rru_A0674 at 796.366 kb on + strand, within Rru_A0674 at 796.367 kb on - strand, within Rru_A0674 at 796.367 kb on - strand, within Rru_A0674 at 796.422 kb on - strand, within Rru_A0674 at 796.528 kb on - strand, within Rru_A0674 at 796.528 kb on - strand, within Rru_A0674 at 796.543 kb on + strand, within Rru_A0674 at 796.544 kb on - strand, within Rru_A0674 at 796.615 kb on + strand, within Rru_A0674 at 796.616 kb on - strand, within Rru_A0674 at 796.822 kb on + strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.823 kb on - strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.824 kb on + strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.825 kb on - strand, within Rru_A0674 at 796.887 kb on + strand, within Rru_A0674 at 796.888 kb on - strand, within Rru_A0674 at 796.905 kb on + strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.975 kb on - strand at 796.990 kb on + strand at 797.002 kb on + strand at 797.003 kb on - strand at 797.124 kb on + strand at 797.127 kb on + strand at 797.127 kb on + strand at 797.128 kb on - strand at 797.146 kb on - strand at 797.179 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.190 kb on - strand at 797.236 kb on + strand at 797.243 kb on + strand at 797.244 kb on - strand at 797.295 kb on + strand at 797.319 kb on - strand at 797.352 kb on + strand at 797.384 kb on + strand at 797.384 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.521 kb on + strand at 797.521 kb on + strand at 797.542 kb on + strand at 797.591 kb on + strand at 797.641 kb on + strand at 797.641 kb on + strand at 797.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 795,021 - Rru_A0672 0.46 -0.0 795,094 + Rru_A0672 0.70 +1.2 795,095 - Rru_A0672 0.70 +0.7 795,169 - +0.4 795,169 - -0.0 795,174 - -0.0 795,184 - -0.0 795,256 + +1.6 795,256 + -0.0 795,257 - +1.4 795,519 + -0.0 795,522 + +1.8 795,598 + Rru_A0673 0.19 +0.8 795,599 - Rru_A0673 0.19 +1.0 795,599 - Rru_A0673 0.19 -0.1 795,599 - Rru_A0673 0.19 +0.8 795,629 - Rru_A0673 0.29 +0.7 795,629 - Rru_A0673 0.29 +0.2 795,793 - Rru_A0673 0.82 -0.0 795,837 + +0.8 795,837 + +0.7 795,838 - -0.0 795,840 + +1.1 795,840 + +1.0 795,841 - -0.0 795,841 - -0.0 795,928 - +1.5 796,104 + Rru_A0674 0.17 -0.0 796,104 + Rru_A0674 0.17 -0.0 796,104 + Rru_A0674 0.17 +0.7 796,104 + Rru_A0674 0.17 +1.2 796,105 - Rru_A0674 0.17 +2.0 796,105 - Rru_A0674 0.17 +1.6 796,134 - Rru_A0674 0.20 -0.0 796,345 + Rru_A0674 0.38 -0.0 796,345 + Rru_A0674 0.38 +0.8 796,345 + Rru_A0674 0.38 +2.7 796,345 + Rru_A0674 0.38 +1.2 796,345 + Rru_A0674 0.38 -0.0 796,345 + Rru_A0674 0.38 +1.6 796,346 - Rru_A0674 0.38 +1.4 796,346 - Rru_A0674 0.38 +1.2 796,346 - Rru_A0674 0.38 +0.3 796,346 - Rru_A0674 0.38 +1.5 796,349 - Rru_A0674 0.38 +1.0 796,366 + Rru_A0674 0.40 -0.0 796,366 + Rru_A0674 0.40 +1.0 796,367 - Rru_A0674 0.40 +0.6 796,367 - Rru_A0674 0.40 +1.4 796,422 - Rru_A0674 0.45 +1.0 796,528 - Rru_A0674 0.54 +0.6 796,528 - Rru_A0674 0.54 +1.2 796,543 + Rru_A0674 0.55 -0.0 796,544 - Rru_A0674 0.55 -0.0 796,615 + Rru_A0674 0.61 +2.8 796,616 - Rru_A0674 0.61 +1.7 796,822 + Rru_A0674 0.79 +1.3 796,823 - Rru_A0674 0.79 -0.0 796,823 - Rru_A0674 0.79 +1.4 796,823 - Rru_A0674 0.79 +1.8 796,824 + Rru_A0674 0.79 +2.8 796,824 + Rru_A0674 0.79 -1.7 796,824 + Rru_A0674 0.79 -0.0 796,825 - Rru_A0674 0.79 +1.0 796,825 - Rru_A0674 0.79 +1.9 796,825 - Rru_A0674 0.79 +1.7 796,825 - Rru_A0674 0.79 -0.0 796,825 - Rru_A0674 0.79 -0.0 796,825 - Rru_A0674 0.79 -0.0 796,887 + Rru_A0674 0.85 +1.4 796,888 - Rru_A0674 0.85 -1.6 796,905 + Rru_A0674 0.86 +0.8 796,906 - Rru_A0674 0.86 +1.4 796,906 - Rru_A0674 0.86 -0.0 796,906 - Rru_A0674 0.86 +0.7 796,975 - +1.0 796,990 + +0.4 797,002 + -0.0 797,003 - -0.0 797,124 + +1.6 797,127 + -0.0 797,127 + +1.2 797,128 - -0.0 797,146 - +1.6 797,179 - +2.3 797,188 - -0.0 797,188 - +1.2 797,188 - +1.7 797,190 - -0.0 797,236 + -0.0 797,243 + +0.3 797,244 - +1.2 797,295 + -0.0 797,319 - +0.8 797,352 + +0.5 797,384 + +0.9 797,384 + +0.4 797,477 + +3.0 797,477 + -0.0 797,521 + -0.0 797,521 + +1.0 797,542 + -0.0 797,591 + +1.4 797,641 + -1.0 797,641 + -0.0 797,757 - -0.0
Or see this region's nucleotide sequence